| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2440041 = | 55 (0.560) | 7 (0.080) | 6/136 | NT | 13.5% | intergenic (+2/+64) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component |
| ? | USA300TCH1516_ALE | 2440099 = | 43 (0.510) | intergenic (+60/+6) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component | |||||
Only 100 of 127 total aligned reads displayed.
ATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTC > USA300TCH1516_ALE/2439952‑2440131 | aagttgtagtaggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaaa < 1:111522‑M1/2‑1 (MQ=255) agttgtagtaggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaaaa < 1:3921920‑M1/3‑1 (MQ=255) agttgtagtaggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaaaa < 1:3471848‑M1/3‑1 (MQ=255) gTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAG > 1:2274602‑M1/1‑91 (MQ=255) ttACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGA < 1:4037436‑M1/91‑1 (MQ=255) aCATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACA > 1:669457‑M1/1‑91 (MQ=255) aCATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACA < 1:230774‑M1/91‑1 (MQ=255) aCATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACA < 1:230773‑M1/91‑1 (MQ=255) cATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACAC > 1:1454421‑M1/1‑91 (MQ=255) agtaggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGacac > 1:62473‑M1/83‑91 (MQ=255) agtaggtatgacagtaccacaagttcgtgaagcatttgaacaaatgcttgaggatcaatcgtccgaagataaataatacaaaAAAAGacac < 1:3311731‑M1/9‑1 (MQ=255) agtaggtatgacagtaccacaagttcgtgaagcatttcaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGacac < 1:3492447‑M1/9‑1 (MQ=255) gtaggtatgacagtaccacaagttcgtgaaggatttgaacaaatagttgaggatcaatcgtccgaagctaaataatacaaaAAAAGAcaca > 1:3312318‑M1/82‑91 (MQ=255) gtaggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGAcaca < 1:974050‑M1/10‑1 (MQ=255) gtaggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGAcaca < 1:819277‑M1/10‑1 (MQ=255) gtaggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGAcaca > 1:997579‑M1/82‑91 (MQ=255) gtaggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGAcaca < 1:974064‑M1/10‑1 (MQ=255) gtaggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGAcaca > 1:1432714‑M1/82‑91 (MQ=255) aTACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA < 1:3503252‑M1/91‑1 (MQ=255) aTACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA > 1:765704‑M1/1‑91 (MQ=255) taggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGACACAt < 1:4055475‑M1/11‑1 (MQ=255) taggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGACACAt < 1:2383435‑M1/11‑1 (MQ=255) tACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACAT > 1:1796908‑M1/1‑91 (MQ=255) tGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATAc > 1:729923/1‑91 (MQ=255) cAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACga > 1:913483/1‑91 (MQ=255) aaCTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACgat < 1:3164677/91‑1 (MQ=255) aaCTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCACGTATATCATAATAAAAGACACATC‑‑TATACgat < 1:1412615/91‑1 (MQ=255) aCTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACgatg > 1:897056/1‑91 (MQ=255) aCTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACgatg > 1:3350356/1‑91 (MQ=255) aCTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACgatg > 1:1186534/1‑91 (MQ=255) cTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACgatga < 1:3629960/91‑1 (MQ=255) gAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCa > 1:2878661/1‑91 (MQ=255) gAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCa > 1:2878638/1‑91 (MQ=255) tatCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTa > 1:166056/1‑91 (MQ=255) atCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTAc < 1:2856277/91‑1 (MQ=255) gACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAAt > 1:14864/1‑91 (MQ=255) aTTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGAt < 1:4044125/91‑1 (MQ=255) aTTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGAt < 1:2786372/91‑1 (MQ=255) aTTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGAt < 1:4044173/91‑1 (MQ=255) tCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATtatacgcaatcattgtaaatgatcat < 1:2665892‑M1/91‑27 (MQ=255) tCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATtatacgcaatcattgtaaatgatcat < 1:2667030‑M1/91‑27 (MQ=255) tATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCg < 1:1702531/91‑1 (MQ=255) tATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCg < 1:1669353/91‑1 (MQ=255) tATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCg < 1:676436/91‑1 (MQ=255) tATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCg > 1:2714728/1‑91 (MQ=255) tCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGta > 1:1164911/1‑91 (MQ=255) tCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGta > 1:133489/1‑91 (MQ=255) tCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGta > 1:1164466/1‑91 (MQ=255) atttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGACACATCACTATACGATGATCATTTACAATGATTGCg > 1:3815714‑M1/50‑91 (MQ=255) cTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGtat > 1:850570/1‑91 (MQ=255) tGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGtata < 1:2817116/91‑1 (MQ=255) tGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGtata < 1:3924291/91‑1 (MQ=255) gCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAg > 1:3416409/1‑91 (MQ=255) ccAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGt > 1:3119288/1‑91 (MQ=255) cAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtatag < 1:4074519‑M1/91‑36 (MQ=255) cAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTg < 1:1970281‑M2/91‑2 (MQ=255) cAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTg < 1:1970158‑M2/91‑2 (MQ=255) acaaatggttgaggatcaatcgtccgaagataaatagtacaaaAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGa > 1:248183‑M1/44‑91 (MQ=255) aaTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTga > 1:1722760‑M2/1‑89 (MQ=255) aaTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTga > 1:2738352‑M2/1‑89 (MQ=255) aTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgat < 1:2123273‑M2/91‑4 (MQ=255) ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatg > 1:1948010‑M2/1‑87 (MQ=255) ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatg < 1:3962060‑M2/91‑5 (MQ=255) ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatg > 1:2383762‑M2/1‑87 (MQ=255) ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAAAAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtatagatg < 1:1994543‑M1/91‑39 (MQ=255) tataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgt < 1:832778‑M1/91‑40 (MQ=255) tataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatgt > 1:3405805‑M2/1‑86 (MQ=255) aatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGAtgt > 1:2495178‑M1/41‑91 (MQ=255) aatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGAtgt > 1:2495201‑M1/41‑91 (MQ=255) ataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatgtg > 1:1156384‑M2/1‑85 (MQ=255) ataGATCGTCATCAATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatgtg > 1:284962‑M2/1‑85 (MQ=255) aGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtc > 1:36686‑M2/1‑83 (MQ=255) gttgaggatcaatcgtccgaagataaataatacaaaAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCt > 1:4132480‑M1/37‑91 (MQ=255) gATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtct < 1:3475351‑M2/91‑10 (MQ=255) aTCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtctt < 1:785101‑M1/91‑45 (MQ=255) aTCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtctt < 1:263266‑M1/91‑45 (MQ=255) cGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtctttt < 1:1820072‑M2/91‑13 (MQ=255) aggatcaatcgtccgaagataaataatacaaaAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCttttt > 1:3075382‑M1/33‑91 (MQ=255) tCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttat < 1:1199480‑M1/91‑49 (MQ=255) cATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttatt < 1:881502‑M1/91‑50 (MQ=255) cATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCttttttt < 1:2290417/91‑1 (MQ=255) tCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGt < 1:241791/91‑1 (MQ=255) tCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGt < 1:469296/91‑1 (MQ=255) tCTATGAGCAAAGCTCGTAGATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGt < 1:1333885/91‑1 (MQ=255) aGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTattatt > 1:371715/1‑91 (MQ=255) gCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttattt < 1:2885394/91‑1 (MQ=255) gCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttattt < 1:2885505/91‑1 (MQ=255) cAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttattta > 1:3287710/1‑91 (MQ=255) aaGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATc < 1:832214/91‑1 (MQ=255) aGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCt > 1:308735/1‑91 (MQ=255) gCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCtt > 1:2948317/1‑91 (MQ=255) tCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCg > 1:1141115/1‑91 (MQ=255) cGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg > 1:2282410/1‑91 (MQ=255) cGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg > 1:623202/1‑91 (MQ=255) gTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGa > 1:1049965/1‑91 (MQ=255) tCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGAtt < 1:3243401/91‑1 (MQ=255) cATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTg < 1:3644197/91‑1 (MQ=255) aataaAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatg < 1:881502‑M2/91‑43 (MQ=255) aaaaGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacg < 1:1820072‑M1/91‑80 (MQ=255) AAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTc > 1:1505941‑M1/1‑91 (MQ=255) | ATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTC > USA300TCH1516_ALE/2439952‑2440131 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |