| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2440052 | 54 (0.550) | 9 (0.110) | 7/136 | NT | 16.8% | intergenic (+13/+53) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component |
| ? | USA300TCH1516_ALE | = 2440086 | 43 (0.510) | intergenic (+47/+19) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component | |||||
TTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2439953‑2440052‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagacacatcACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTG < USA300TCH1516_ALE/2440086‑2439997 TTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAA < 1:3441943/91‑1 GTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAG > 1:2274602/1‑91 TTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGA < 1:4037436/91‑1 ACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACA < 1:230774/91‑1 ACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACA < 1:230773/91‑1 ACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACA > 1:669457/1‑91 CATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACAC < 1:877932/91‑1 CATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACAC > 1:1454421/1‑91 ATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA > 1:765704/1‑91 ATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA < 1:3503252/91‑1 TACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACAT > 1:1796908/1‑91 TCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACAT‑‑CTATACGCAATCATTGTAAATGATCAT < 1:2665892/91‑1 TCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACAT‑‑CTATACGCAATCATTGTAAATGATCAT < 1:2667030/91‑1 CAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAG < 1:4074519/91‑1 TTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATG < 1:1994543/91‑1 TATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGT < 1:832778/91‑1 ATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTT < 1:785101/91‑1 ATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTT < 1:263266/91‑1 TCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTAT < 1:1199480/91‑1 CATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATT < 1:881502/91‑1 AAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACG < 1:1820072/91‑1 AGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATC < 1:3475351/91‑1 GACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCT > 1:36686/1‑91 CACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATTGATGACGATCTAT > 1:284962/1‑91 CACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTAT > 1:1156384/1‑91 ACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATA > 1:3405805/1‑91 CATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAA > 1:2383762/1‑91 CATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAA < 1:3962060/91‑1 CATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAA > 1:1948333/1‑91 CATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAA > 1:1948010/1‑91 ATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAAT < 1:2123273/91‑1 ATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAAT < 1:3219165/91‑1 TCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATT > 1:1722760/1‑91 TCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATT > 1:2738352/1‑91 CACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTG < 1:1970281/91‑1 CACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTG < 1:1970158/91‑1 TTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2439953‑2440052‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagacacatcACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTG < USA300TCH1516_ALE/2440086‑2439997 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |