| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2440052 | 54 (0.550) | 9 (0.110) | 7/136 | NT | 16.8% | intergenic (+13/+53) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component |
| ? | USA300TCH1516_ALE | = 2440086 | 43 (0.510) | intergenic (+47/+19) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component | |||||
Only 100 of 130 total aligned reads displayed.
TGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTT > USA300TCH1516_ALE/2439967‑2440142 | tGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATAc > 1:729923/1‑91 (MQ=255) cAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACga > 1:913483/1‑91 (MQ=255) aaCTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACgat < 1:1761540/91‑1 (MQ=255) aaCTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACgat < 1:3164677/91‑1 (MQ=255) aCTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACgatg > 1:897056/1‑91 (MQ=255) aCTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACgatg > 1:1186534/1‑91 (MQ=255) cTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACgatga < 1:3629960/91‑1 (MQ=255) gAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCa > 1:2878661/1‑91 (MQ=255) gAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCa > 1:2878638/1‑91 (MQ=255) tatCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTa > 1:166056/1‑91 (MQ=255) atCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTAc < 1:2856277/91‑1 (MQ=255) gACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAAt > 1:14864/1‑91 (MQ=255) aTTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGAt < 1:4044173/91‑1 (MQ=255) aTTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGAt < 1:4044125/91‑1 (MQ=255) tCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATtatacgcaatcattgtaaatgatcat < 1:2665892‑M1/91‑27 (MQ=255) tATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCg < 1:1669353/91‑1 (MQ=255) tATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCg < 1:1702531/91‑1 (MQ=255) tATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCg > 1:2714728/1‑91 (MQ=255) tATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCg < 1:676436/91‑1 (MQ=255) tCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGta > 1:133489/1‑91 (MQ=255) tCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGta > 1:1164911/1‑91 (MQ=255) tCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGta > 1:1164466/1‑91 (MQ=255) atttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGACACATCACTATACGATGATCATTTACAATGATTGCg > 1:3815714‑M1/50‑91 (MQ=255) cTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGtat > 1:850570/1‑91 (MQ=255) tGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGtata < 1:2817116/91‑1 (MQ=255) gCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAg > 1:3416409/1‑91 (MQ=255) ccAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGt > 1:3119288/1‑91 (MQ=255) cAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtatag < 1:4074519‑M1/91‑36 (MQ=255) cAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTg < 1:1970158‑M2/91‑2 (MQ=255) acaaatggttgaggatcaatcgtccgaagataaatagtacaaaAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGa > 1:248183‑M1/44‑91 (MQ=255) aaTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTga > 1:2738352‑M2/1‑89 (MQ=255) aaTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTga > 1:1722760‑M2/1‑89 (MQ=255) aTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgat < 1:2123273‑M2/91‑4 (MQ=255) aTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgat < 1:3219165‑M2/91‑4 (MQ=255) ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatg < 1:3962060‑M2/91‑5 (MQ=255) ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatg > 1:1948010‑M2/1‑87 (MQ=255) ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatg > 1:2383762‑M2/1‑87 (MQ=255) ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAAAAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtatagatg < 1:1994543‑M1/91‑39 (MQ=255) tataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgt < 1:832778‑M1/91‑40 (MQ=255) tataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatgt > 1:3405805‑M2/1‑86 (MQ=255) aatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGAtgt > 1:2495178‑M1/41‑91 (MQ=255) aatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGAtgt > 1:2495201‑M1/41‑91 (MQ=255) ataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatgtg > 1:1156384‑M2/1‑85 (MQ=255) tggttgaggatcaatcgtccgaagataaataatacaaaAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATgtgt > 1:792410‑M1/39‑91 (MQ=255) aGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtc > 1:36686‑M2/1‑83 (MQ=255) gttgaggatcaatcgtccgaagataaataatacaaaAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCt > 1:4132480‑M1/37‑91 (MQ=255) gATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtct < 1:3475351‑M2/91‑10 (MQ=255) aTCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtctt < 1:263266‑M1/91‑45 (MQ=255) aTCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtctt < 1:785101‑M1/91‑45 (MQ=255) cGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtctttt < 1:1820072‑M2/91‑13 (MQ=255) aggatcaatcgtccgaagataaataatacaaaAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCttttt > 1:3075382‑M1/33‑91 (MQ=255) cATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCttttttt < 1:2290417/91‑1 (MQ=255) tCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGt < 1:469758/91‑1 (MQ=255) tCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGt < 1:241791/91‑1 (MQ=255) tCTATGAGCAAAGCTCGTAGATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGt < 1:1333885/91‑1 (MQ=255) tGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtatta < 1:2830394/91‑1 (MQ=255) aGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTattatt > 1:371715/1‑91 (MQ=255) gCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttattt < 1:2885394/91‑1 (MQ=255) gCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttattt < 1:2885505/91‑1 (MQ=255) cAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttattta > 1:3287710/1‑91 (MQ=255) aGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCt > 1:308735/1‑91 (MQ=255) gCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCtt > 1:2948317/1‑91 (MQ=255) tCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCg > 1:1141115/1‑91 (MQ=255) cGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg > 1:623202/1‑91 (MQ=255) gTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGa > 1:1049965/1‑91 (MQ=255) tCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGAtt < 1:3243401/91‑1 (MQ=255) cATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTg < 1:3644197/91‑1 (MQ=255) aataaAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatg < 1:881502‑M2/91‑43 (MQ=255) ataaAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatga < 1:1199480‑M2/91‑44 (MQ=255) AAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTc > 1:1505941‑M1/1‑91 (MQ=255) AAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTc > 1:1505953‑M1/1‑91 (MQ=255) AAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa < 1:2816717‑M1/91‑1 (MQ=255) AAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa < 1:2220224‑M1/91‑1 (MQ=255) AAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa < 1:2220233‑M1/91‑1 (MQ=255) AAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa < 1:2220303‑M1/91‑1 (MQ=255) aaGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacgat < 1:263266‑M2/91‑48 (MQ=255) aaGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacgat < 1:785101‑M2/91‑48 (MQ=255) AAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCaa < 1:1469908‑M1/91‑1 (MQ=255) AGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAc > 1:3561963‑M1/1‑91 (MQ=255) AGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAc > 1:3837606‑M1/1‑91 (MQ=255) AGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAc > 1:3837748‑M1/1‑91 (MQ=255) gACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatct > 1:36686‑M1/1‑8 (MQ=255) cacaTCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcattgatgacgatctat > 1:284962‑M1/1‑6 (MQ=255) cacaTCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctat > 1:1156384‑M1/1‑6 (MQ=255) CACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAt > 1:1783834‑M1/1‑91 (MQ=255) acaTCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctata > 1:3405805‑M1/1‑5 (MQ=255) acaTC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacgatctata < 1:832778‑M2/91‑53 (MQ=255) caTCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataa > 1:1948333‑M1/1‑4 (MQ=255) caTCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataa > 1:1948010‑M1/1‑4 (MQ=255) caTCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataa > 1:2383762‑M1/1‑4 (MQ=255) caTCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataa < 1:3962060‑M1/91‑88 (MQ=255) caTC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtctttttttatgatatacgagctttgctcatagatgacgatctataa < 1:1994543‑M2/91‑54 (MQ=255) aTCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataat < 1:2123273‑M1/91‑89 (MQ=255) tCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataatt > 1:2738352‑M1/1‑2 (MQ=255) cactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataattg < 1:1970281‑M1/91‑91 (MQ=255) cactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataattg < 1:1970158‑M1/91‑91 (MQ=255) c‑‑TATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataattg < 1:4074519‑M2/91‑57 (MQ=255) C‑‑TATACGCTGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGtt > 1:2083600‑M1/1‑91 (MQ=255) C‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGtt > 1:2143138‑M1/1‑91 (MQ=255) C‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGtt > 1:2143281‑M1/1‑91 (MQ=255) | TGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑TATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTT > USA300TCH1516_ALE/2439967‑2440142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |