| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2440052 | 54 (0.550) | 9 (0.110) | 7/136 | NT | 16.8% | intergenic (+13/+53) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component |
| ? | USA300TCH1516_ALE | = 2440086 | 43 (0.510) | intergenic (+47/+19) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component | |||||
Only 100 of 108 total aligned reads displayed.
CCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACC > USA300TCH1516_ALE/2439996‑2440176 | ccAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGt > 1:3119288/1‑91 (MQ=255) cAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTg < 1:1970158‑M2/91‑2 (MQ=255) acaaatggttgaggatcaatcgtccgaagataaatagtacaaaAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGa > 1:248183‑M1/44‑91 (MQ=255) aaTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTga > 1:1722760‑M2/1‑89 (MQ=255) aaTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTga > 1:2738352‑M2/1‑89 (MQ=255) aTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgat < 1:2123273‑M2/91‑4 (MQ=255) aTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgat < 1:3219165‑M2/91‑4 (MQ=255) ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatg > 1:2383762‑M2/1‑87 (MQ=255) ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatg > 1:1948333‑M2/1‑87 (MQ=255) ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatg > 1:1948010‑M2/1‑87 (MQ=255) ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatg < 1:3962060‑M2/91‑5 (MQ=255) tataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgt > 1:3405805‑M2/1‑86 (MQ=255) aatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGAtgt > 1:2495201‑M1/41‑91 (MQ=255) aatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGAtgt > 1:2495178‑M1/41‑91 (MQ=255) ataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtg > 1:1156384‑M2/1‑85 (MQ=255) ataGATCGTCATCAATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtg > 1:284962‑M2/1‑85 (MQ=255) tggttgaggatcaatcgtccgaagataaataatacaaaAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATgtgt > 1:792410‑M1/39‑91 (MQ=255) aGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtc > 1:36686‑M2/1‑83 (MQ=255) gttgaggatcaatcgtccgaagataaataatacaaaAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCt > 1:4132480‑M1/37‑91 (MQ=255) gATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtct < 1:3475351‑M2/91‑10 (MQ=255) cGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtctttt < 1:1820072‑M2/91‑13 (MQ=255) tCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGt < 1:469758/91‑1 (MQ=255) tCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGt < 1:241791/91‑1 (MQ=255) tCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGt < 1:469296/91‑1 (MQ=255) tCTATGAGCAAAGCTCGTAGATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGt < 1:1333885/91‑1 (MQ=255) tGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtatta < 1:2830394/91‑1 (MQ=255) aGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTattatt > 1:371715/1‑91 (MQ=255) gCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttattt < 1:2885505/91‑1 (MQ=255) gCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttattt < 1:2885394/91‑1 (MQ=255) gCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttattt < 1:2885371/91‑1 (MQ=255) cAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttattta > 1:3287710/1‑91 (MQ=255) aaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATc < 1:832214/91‑1 (MQ=255) aGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCt > 1:308735/1‑91 (MQ=255) gCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCtt > 1:2948317/1‑91 (MQ=255) tCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCg > 1:1141115/1‑91 (MQ=255) cGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg > 1:623202/1‑91 (MQ=255) cGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg > 1:2282410/1‑91 (MQ=255) gTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGa > 1:1049965/1‑91 (MQ=255) tataTCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGAc < 1:3068927/91‑1 (MQ=255) tCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGAtt < 1:3243401/91‑1 (MQ=255) cATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTg < 1:3644197/91‑1 (MQ=255) aataaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGGTTGagg < 1:2604218/91‑3 (MQ=255) ataaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatga < 1:1199480‑M2/91‑44 (MQ=255) taaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCt < 1:3740927/91‑1 (MQ=255) AAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTc > 1:1505941‑M1/1‑91 (MQ=255) AAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTc > 1:1505953‑M1/1‑91 (MQ=255) AAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa < 1:2220224‑M1/91‑1 (MQ=255) AAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa < 1:2220202‑M1/91‑1 (MQ=255) AAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa < 1:2220233‑M1/91‑1 (MQ=255) AAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa < 1:2220303‑M1/91‑1 (MQ=255) AAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa < 1:2816717‑M1/91‑1 (MQ=255) aaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacgat < 1:263266‑M2/91‑48 (MQ=255) aaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacgat < 1:785101‑M2/91‑48 (MQ=255) AAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCaa < 1:1469908‑M1/91‑1 (MQ=255) AGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAc > 1:3837606‑M1/1‑91 (MQ=255) AGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAc > 1:3837748‑M1/1‑91 (MQ=255) AGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAc > 1:3561963‑M1/1‑91 (MQ=255) ACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCa > 1:1567587‑M1/1‑91 (MQ=255) ACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCa > 1:211940‑M1/1‑91 (MQ=255) ACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCa > 1:3667628‑M1/1‑91 (MQ=255) CACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAt > 1:1783834‑M1/1‑91 (MQ=255) acaTCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacgatctata < 1:832778‑M2/91‑53 (MQ=255) caTCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtctttttttatgatatacgagctttgctcatagatgacgatctataa < 1:1994543‑M2/91‑54 (MQ=255) cTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataattg < 1:4074519‑M2/91‑57 (MQ=255) CTATACGCTGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGtt > 1:2083600‑M1/1‑91 (MQ=255) CTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGtt > 1:2143138‑M1/1‑91 (MQ=255) CTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGtt > 1:2143281‑M1/1‑91 (MQ=255) ataCGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCa < 1:4149933/91‑1 (MQ=255) ataCGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCa < 1:613389/91‑1 (MQ=255) atgatCATTTACAATGATTGCGTATAGtgtgtcttttattatgatatacgagctttgctcatagatgacgatctataattggcagataga < 1:2665892‑M2/91‑64 (MQ=255) atgatCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGc > 1:1993490/1‑91 (MQ=255) gatCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCtt > 1:1797527/1‑91 (MQ=255) atCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTc < 1:3494939/91‑1 (MQ=255) tCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCa < 1:3156093/91‑1 (MQ=255) tCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCa < 1:3156364/91‑1 (MQ=255) tCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCa > 1:4030032/1‑91 (MQ=255) cATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCAc < 1:1274746/91‑1 (MQ=255) aTTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACg < 1:1502779/91‑1 (MQ=255) tACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAAc > 1:3063016/1‑91 (MQ=255) aCAATGATTGCGTATAGAGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACt < 1:441153/91‑1 (MQ=255) cAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACtt < 1:2991934/91‑1 (MQ=255) aaTGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCATCCATTTGTTCAAATGCTTCACGAACTtg < 1:2701902/91‑1 (MQ=255) aaTGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTtg < 1:599838/91‑1 (MQ=255) aaTGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTtg < 1:553557/91‑1 (MQ=255) aaTGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTtg < 1:78333/91‑1 (MQ=255) gATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTgg > 1:1942910/1‑91 (MQ=255) gATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTgg > 1:1943454/1‑91 (MQ=255) gATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTgg < 1:2481993/91‑1 (MQ=255) gATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTgg < 1:2481174/91‑1 (MQ=255) tGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTAc < 1:2982017/91‑1 (MQ=255) tGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTAc > 1:2246931/1‑91 (MQ=255) ataGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCa < 1:86776/91‑1 (MQ=255) ataGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCa < 1:2369491/91‑1 (MQ=255) ataGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCa < 1:1091838/91‑1 (MQ=255) taGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCAt > 1:3938686/1‑91 (MQ=255) taGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCAt > 1:2589227/1‑91 (MQ=255) tGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATAcc < 1:1952451/91‑1 (MQ=255) tGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATAcc < 1:1952435/91‑1 (MQ=255) tGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATAcc < 1:1952371/91‑1 (MQ=255) tGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATAcc > 1:1275014/1‑91 (MQ=255) | CCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACC > USA300TCH1516_ALE/2439996‑2440176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |