| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2442806 = | 67 (0.680) | 6 (0.080) | 6/128 | NT | 9.0% | intergenic (+3/+55) | glvR/USA300HOU_RS12585 | HTH‑type transcriptional regulator GlvR/hypothetical protein |
| ? | USA300TCH1516_ALE | 2442855 = | 67 (0.850) | intergenic (+52/+6) | glvR/USA300HOU_RS12585 | HTH‑type transcriptional regulator GlvR/hypothetical protein | |||||
TTGATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2442911‑2442806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTC > USA300TCH1516_ALE/2442855‑2442944 TTGATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAA > 1:2481146/1‑91 TGATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAAT < 1:1851796/91‑1 TGATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAAT > 1:3939144/1‑91 TGATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAAT < 1:1648075/91‑1 GATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATC > 1:316457/1‑91 TGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCAT < 1:1667623/91‑1 GTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATA > 1:2791012/1‑91 TTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAA < 1:966335/91‑1 TTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAA < 1:824202/91‑1 TGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACT > 1:3744915/1‑91 TGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACT > 1:3744899/1‑91 TGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACT > 1:808815/1‑91 TGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACT < 1:1945699/91‑1 TGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACT > 1:807483/1‑91 TGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACT > 1:807471/1‑91 TGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACT < 1:657972/91‑1 ATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTC > 1:2195146/1‑91 TAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCC < 1:4072463/91‑1 AAGATGTACCACGTTATCGAAACATCAACACAATAATGAAATGATACAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCT > 1:3310981/1‑91 AAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCT > 1:3267365/1‑91 GATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTT > 1:996787/1‑91 ATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTT > 1:2945669/1‑91 ATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTT > 1:1194794/1‑91 AATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCATTTTATTGTTGTGTTGATGTTTCGATAACGTG > 1:494416/1‑91 AGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCA > 1:3657423/1‑91 GTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAA > 1:995924/1‑91 ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACA > 1:1793572/1‑91 TGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACAT > 1:642589/1‑91 AGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAAT > 1:2238758/1‑91 ATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCAT < 1:957423/91‑1 ATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCAT < 1:1333992/91‑1 ATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCAT > 1:1363251/1‑91 ATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCAT < 1:1436400/91‑1 TCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATG < 1:559864/91‑1 TCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATG < 1:88517/91‑1 TCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATG < 1:224207/91‑1 ATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGC > 1:2199961/1‑91 ATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGC > 1:2199815/1‑91 TAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCA < 1:3033471/91‑1 ACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATC > 1:3156661/1‑91 ACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATC > 1:3156834/1‑91 ACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATC > 1:193475/1‑91 ACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATC > 1:3157398/1‑91 TCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATG < 1:3627961/91‑1 CCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGA < 1:1481506/91‑1 CCTGTTATCGTTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGA < 1:3727320/91‑1 CTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGAT < 1:2315429/91‑1 CTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGAT > 1:1693683/1‑91 CTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGAT > 1:1693582/1‑91 TTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATT < 1:2284785/91‑1 TTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATT > 1:2636642/1‑91 TATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTC > 1:3631313/1‑91 TTGATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2442911‑2442806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTC > USA300TCH1516_ALE/2442855‑2442944 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |