| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2442821 | 78 (0.790) | 9 (0.110) | 7/128 | NT | 12.2% | intergenic (+18/+40) | glvR/USA300HOU_RS12585 | HTH‑type transcriptional regulator GlvR/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2442838 | 67 (0.850) | intergenic (+35/+23) | glvR/USA300HOU_RS12585 | HTH‑type transcriptional regulator GlvR/hypothetical protein | |||||
TTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2442716‑2442821‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaggaagttatgatAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTGTT < USA300TCH1516_ALE/2442838‑2442749 TTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAA > 1:309143/1‑91TTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAA > 1:120250/1‑91TTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAA > 1:2647996/1‑91TTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAA < 1:3502500/91‑1 TCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAA > 1:2223863/1‑91 TCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAA > 1:1569324/1‑91 CTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAA < 1:3520582/91‑1 TAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAA > 1:2827453/1‑91 TAGCTTCATCAGCTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAA > 1:3174898/1‑91 AGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAG > 1:3153498/1‑91 GCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTTCTACATAATGATATTTCAAATTAGAAAAAAGG < 1:1121525/91‑1 GCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGG > 1:744479/1‑91 GCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGG > 1:3006703/1‑91 TTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAA < 1:3061093/91‑1 TTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAACGATATTTCAAATTAGAAAAAAGGAA > 1:2874269/1‑91 CATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGT > 1:3843570/1‑91 TCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTA > 1:3277895/1‑91 CAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTGGAAAAAAGGAAGTTAT < 1:3062309/91‑1 CAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTAT < 1:3062290/91‑1 AGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATG < 1:676205/91‑1 GTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGA < 1:1519739/91‑1 GTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGA < 1:1968767/91‑1 GTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGA < 1:3136941/91‑1 TTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAT > 1:2253703/1‑91 AACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAA < 1:577791/91‑1 ACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAAT < 1:3947994/91‑1 CACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATC < 1:1924004/91‑1 ACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCA < 1:3476143/91‑1 ACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCA < 1:4118721/91‑1 TGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAA < 1:2484676/91‑1 AAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTT < 1:500870/91‑1 AAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTT < 1:879574/91‑1 AAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTT < 1:3805586/91‑1 AAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATAT > 1:3477870/1‑91 AAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATAT < 1:4076692/91‑1 AAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATT < 1:33814/91‑1 AAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTT > 1:471644/1‑91 AAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTT > 1:471588/1‑91 AGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCCTTATATTTT > 1:3980132/1‑91 AGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTT < 1:4053653/91‑1 AGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTT > 1:673046/1‑91 AGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTT < 1:1268332/91‑1 AGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTT < 1:1268342/91‑1 AGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTT > 1:3943879/1‑91 GGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTC > 1:1703631/1‑91 GAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCT < 1:1055873/91‑1 GAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTCAAATATCATTATGTAGTAAATACTCATTATATTTTCT < 1:3511825/91‑1 AAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTT < 1:74098/91‑1 AAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTT < 1:73850/91‑1 AGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTA < 1:1006125/91‑1 AGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTA > 1:1139676/1‑91 AGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTA > 1:2562866/1‑91 GTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTAC > 1:1796166/1‑91 GTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTAC < 1:3258953/91‑1 TTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACA < 1:1015126/91‑1 TATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAA < 1:1054122/91‑1 ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG > 1:2077256/1‑91 ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG < 1:791243/91‑1 TGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGT > 1:3436731/1‑91 TGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGT > 1:3946030/1‑91 TAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTGTT < 1:528070/91‑1 TTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2442716‑2442821‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaggaagttatgatAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTGTT < USA300TCH1516_ALE/2442838‑2442749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |