New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 244282178 (0.790)9 (0.110) 7/128 NT 12.2% intergenic (+18/+40) glvR/USA300HOU_RS12585 HTH‑type transcriptional regulator GlvR/hypothetical protein
?USA300TCH1516_ALE = 2442838 67 (0.850)intergenic (+35/+23) glvR/USA300HOU_RS12585 HTH‑type transcriptional regulator GlvR/hypothetical protein

Only 100 of 148 total aligned reads displayed.

AAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCA  >  USA300TCH1516_ALE/2442748‑2442928
                                                                                          |                                                                                          
attgatgtttgataagatgtaccacgttatcgaaacatcaacacaacaataaaatgatAAAAGGAAGTTATGATTTAATGGCCTTGAGCCt                                                                                            >  1:2238758‑M1/59‑91 (MQ=255)
 aaCACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTa                                                                                           <  1:528070‑M2/91‑2 (MQ=255)
    atgtttgataagatgtaccacgttatcgaaacatcaacacaacaataaaatgatAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCa                                                                                        >  1:642589‑M1/55‑91 (MQ=255)
    acTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatca                                                                                        >  1:3946030‑M2/1‑87 (MQ=255)
     cTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcat                                                                                       <  1:791243‑M2/91‑6 (MQ=255)
     cTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcat                                                                                       >  1:2077256‑M2/1‑86 (MQ=255)
      ttGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcata                                                                                      <  1:1054122‑M2/91‑7 (MQ=255)
       tGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataa                                                                                     <  1:1015126‑M2/91‑8 (MQ=255)
        ttgataagatgtaccacgttatcgaaacatcaacacaacaataaaatgatAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAAc                                                                                    >  1:995924‑M1/51‑91 (MQ=255)
        gTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataac                                                                                    <  1:3258953‑M2/91‑9 (MQ=255)
        gTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataac                                                                                    >  1:1796166‑M2/1‑83 (MQ=255)
         tAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataact                                                                                   <  1:1006125‑M2/91‑10 (MQ=255)
         tAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataact                                                                                   >  1:2562866‑M2/1‑82 (MQ=255)
          aaGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataactt                                                                                  <  1:74098‑M2/91‑11 (MQ=255)
           aGAAAATATAATGAGTATTTACTACATAATGATATTTGAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttc                                                                                 <  1:3511825‑M2/91‑12 (MQ=255)
            gAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttcc                                                                                >  1:1703631‑M2/1‑79 (MQ=255)
             aaaaTATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttcct                                                                               <  1:1268342‑M2/91‑14 (MQ=255)
             aaaaTATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttcct                                                                               <  1:1268332‑M2/91‑14 (MQ=255)
             aaaaTATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttcct                                                                               <  1:4053653‑M2/91‑14 (MQ=255)
             aaaaTATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttcct                                                                               >  1:673046‑M2/1‑78 (MQ=255)
             aaaaTATAAGGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttcct                                                                               >  1:3980132‑M2/1‑78 (MQ=255)
              aaaTATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttcctt                                                                              >  1:471644‑M2/1‑77 (MQ=255)
               aaTATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttccttt                                                                             <  1:33814‑M2/91‑16 (MQ=255)
                atatAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttcctttt                                                                            >  1:3477870‑M2/1‑75 (MQ=255)
                atatAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttcctttt                                                                            <  1:4076692‑M2/91‑17 (MQ=255)
                   taATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATc                                                                         >  1:1866136/1‑91 (MQ=255)
                    aaTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCa                                                                        >  1:2694342/1‑91 (MQ=255)
                     aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                                       >  1:4714/1‑91 (MQ=255)
                     aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                                       <  1:837495/91‑1 (MQ=255)
                     aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAACCTATCATAACTTCCTGTTATCAt                                                                       >  1:2077834/1‑91 (MQ=255)
                      tGAGTATGTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAtt                                                                      <  1:2095034/91‑1 (MQ=255)
                         gTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTa                                                                   <  1:3005322/91‑1 (MQ=255)
                           aTTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAtt                                                                 <  1:3751732/91‑1 (MQ=255)
                             ttACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttgt                                                               >  1:1391917/1‑91 (MQ=255)
                               actacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttgttg                                                             >  1:2490036/1‑91 (MQ=255)
                               actacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttgttg                                                             >  1:2656667/1‑91 (MQ=255)
                                 tacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtg                                                           <  1:3734236/91‑1 (MQ=255)
                                 tacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtg                                                           <  1:694931/91‑1 (MQ=255)
                                  acATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgt                                                          <  1:401602/91‑1 (MQ=255)
                                  acATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgt                                                          >  1:1968314/1‑91 (MQ=255)
                                   cATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgtt                                                         >  1:845895/1‑91 (MQ=255)
                                   cATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgtt                                                         <  1:3242940/91‑1 (MQ=255)
                                   cATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgtt                                                         <  1:3094002/91‑1 (MQ=255)
                                    aTAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgttg                                                        >  1:158963/1‑91 (MQ=255)
                                      aaTGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGAt                                                      >  1:1819071/1‑91 (MQ=255)
                                       aTGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATg                                                     >  1:1492620/1‑91 (MQ=255)
                                       aTGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATg                                                     >  1:1492501/1‑91 (MQ=255)
                                        tGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGt                                                    <  1:1140709/91‑1 (MQ=255)
                                         gATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGtt                                                   <  1:1363120/91‑1 (MQ=255)
                                         gATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGtt                                                   >  1:1906233/1‑91 (MQ=255)
                                          atatTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGttt                                                  <  1:4043497/91‑1 (MQ=255)
                                           tatTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTc                                                 <  1:2802869/91‑1 (MQ=255)
                                            atTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCg                                                <  1:1617938/91‑1 (MQ=255)
                                             tttCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGa                                               <  1:286714/91‑1 (MQ=255)
                                             tttCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGa                                               <  1:1090433/91‑1 (MQ=255)
                                             tttCAAATTAGAAAAAAGGAAGTTACGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGa                                               <  1:3851470/91‑1 (MQ=255)
                                              ttCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGAt                                              <  1:3579380/91‑1 (MQ=255)
                                               tCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATa                                             >  1:2798509/1‑91 (MQ=255)
                                                     tAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTgg                                       <  1:1364576/91‑1 (MQ=255)
                                                     tAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTgg                                       <  1:242102/91‑1 (MQ=255)
                                                      aGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGt                                      <  1:4110933/91‑1 (MQ=255)
                                                      aGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGt                                      >  1:3922785/1‑91 (MQ=255)
                                                       gAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATCTTATTGTTGTGTTGATGTTTCGATAACGTGGTa                                     >  1:1505825/1‑91 (MQ=255)
                                                        aaaaaaGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTAc                                    <  1:2860251/91‑1 (MQ=255)
                                                        aaaaaaGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTAc                                    >  1:1098236/1‑91 (MQ=255)
                                                        aaaaaaGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTAc                                    <  1:2166635/91‑1 (MQ=255)
                                                          AAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACAt                                  >  1:2945669‑M1/1‑91 (MQ=255)
                                                          AAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACAt                                  >  1:1194794‑M1/1‑91 (MQ=255)
                                                             AGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTGTATCATTTCATTATTGTGTTGATGTTTCGATAACGTGGTACATCtt                               >  1:3310981‑M1/1‑91 (MQ=255)
                                                              GGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTa                              <  1:4072463‑M1/91‑1 (MQ=255)
                                                               GAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTAt                             >  1:2195146‑M1/1‑91 (MQ=255)
                                                                aaGTTATGATTTAATGGCCTTGAGCCTatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttctt                            <  1:500870‑M2/91‑65 (MQ=255)
                                                                 AGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCa                           >  1:808815‑M1/1‑91 (MQ=255)
                                                                 AGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCa                           >  1:807483‑M1/1‑91 (MQ=255)
                                                                 AGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCa                           <  1:1945699‑M1/91‑1 (MQ=255)
                                                                 AGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCa                           >  1:3744899‑M1/1‑91 (MQ=255)
                                                                   ttATGATTTAATGGCCTTGAGCCTatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttaca                         <  1:2484676‑M2/91‑68 (MQ=255)
                                                                   TTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCaaa                         <  1:966335‑M1/91‑1 (MQ=255)
                                                                    TATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAAc                        >  1:2791012‑M1/1‑91 (MQ=255)
                                                                     ATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACa                       <  1:1667623‑M1/91‑1 (MQ=255)
                                                                      tGATTTAATGGCCTTGAGCCTatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaagt                      <  1:3476143‑M2/91‑71 (MQ=255)
                                                                       gATTTAATGGCCTTGAGCCTatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaagtg                     <  1:1924004‑M2/91‑72 (MQ=255)
                                                                       GATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATc                     >  1:316457‑M1/1‑91 (MQ=255)
                                                                        aTTTAATGGCCTTGAGCCTatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaagtgt                    <  1:3947994‑M2/91‑73 (MQ=255)
                                                                        ATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCa                    >  1:3939144‑M1/1‑91 (MQ=255)
                                                                        ATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCa                    <  1:1648075‑M1/91‑1 (MQ=255)
                                                                         tttAATGGCCTTGAGCCTatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaagtgtt                   <  1:577791‑M2/91‑74 (MQ=255)
                                                                         TTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCaa                   >  1:2481146‑M1/1‑91 (MQ=255)
                                                                          ttAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAAt                  <  1:936039/91‑1 (MQ=255)
                                                                            aaTGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTc                <  1:2860800/91‑1 (MQ=255)
                                                                               ggCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGaa             <  1:3911820/91‑1 (MQ=255)
                                                                                  cTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAAcc          >  1:2211978/1‑91 (MQ=255)
                                                                                   ttGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCa         <  1:139746/91‑1 (MQ=255)
                                                                                   ttGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCa         <  1:974500/91‑1 (MQ=255)
                                                                                   ttGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCa         <  1:444427/91‑1 (MQ=255)
                                                                                     gAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATg       <  1:3495957/91‑1 (MQ=255)
                                                                                       gCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGcg     >  1:476508/1‑90 (MQ=255)
                                                                                         cTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCAcc   <  1:3609327/91‑1 (MQ=255)
                                                                                          tATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCa  <  1:3033540/91‑1 (MQ=255)
                                                                                          tATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCa  <  1:3753568/91‑1 (MQ=255)
                                                                                          |                                                                                          
AAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCA  >  USA300TCH1516_ALE/2442748‑2442928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.