| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2455760 | 58 (0.590) | 6 (0.070) | 6/132 | NT | 9.0% | intergenic (+18/+48) | lyrA/rpiA | Lysostaphin resistance protein A/Ribose‑5‑phosphate isomerase A |
| ? | USA300TCH1516_ALE | = 2455780 | 73 (0.900) | intergenic (+38/+28) | lyrA/rpiA | Lysostaphin resistance protein A/Ribose‑5‑phosphate isomerase A | |||||
AAGAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2455657‑2455760‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcgcttgctagCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTTT < USA300TCH1516_ALE/2455780‑2455695 AAGAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACA < 1:1821849/91‑1 AGAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAA < 1:124596/91‑1 AGAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAA > 1:1364828/1‑91 AGAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAA < 1:2543718/91‑1 GAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAA < 1:84620/91‑1 AGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGC > 1:1886792/1‑91 GACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCG < 1:4026644/91‑1 ACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGC < 1:3874926/91‑1 ACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGC > 1:1734719/1‑91 CAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCT < 1:1426995/91‑1 AGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTT > 1:2892154/1‑91 GACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTG > 1:466587/1‑91 AATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTTTT < 1:2477565/91‑1 GCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTTTTAAGAGGT < 1:1883092/91‑1 CAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTTTTAAGAGGTA < 1:586499/91‑1 GAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTTTTAAGAGGTACT < 1:2220735/91‑1 AAACATATCGAAAAAACGGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGC < 1:1533500/91‑1 AACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCA < 1:1338137/91‑1 AAAGCGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTC < 1:2314127/91‑1 AAGCGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCG > 1:408038/1‑91 AGCGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGA > 1:747181/1‑91 GCGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGAT < 1:413371/91‑1 GCGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCACTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGAT < 1:1947812/91‑1 GCGCTCGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTATGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGAT > 1:3582224/1‑91 CGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATA < 1:3348851/91‑1 CGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATA < 1:4114902/91‑1 CTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATG < 1:2742418/91‑1 TTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGT > 1:2026047/1‑91 TGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTT < 1:3487344/91‑1 TGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTT > 1:1681603/1‑91 TGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTT > 1:613141/1‑91 TGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTT < 1:3485830/91‑1 TGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTT > 1:1498264/1‑91 GCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTTT > 1:2745867/1‑91 GCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTTT < 1:3545834/91‑1 AAGAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2455657‑2455760‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcgcttgctagCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTTT < USA300TCH1516_ALE/2455780‑2455695 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |