BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2455760	58 (0.590)	6 (0.070)	6/132	NT	9.0%	intergenic (+18/+48)	lyrA/rpiA	Lysostaphin resistance protein A/Ribose‑5‑phosphate isomerase A
*	?	USA300TCH1516_ALE	= 2455780	73 (0.900)	6 (0.070)	6/132	NT	9.0%	intergenic (+38/+28)	lyrA/rpiA	Lysostaphin resistance protein A/Ribose‑5‑phosphate isomerase A

Only 100 of 107 total aligned reads displayed.

CAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAA  >  USA300TCH1516_ALE/2455690‑2455870

cAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAGACAAATAAGAACTAAGCGCTTGCTAGTACCTCTTAAAAAGatgatg                                                                                            <  1:3304610/91‑1 (MQ=255)

     aaaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagc                                                                                       >  1:2745867‑M2/1‑86 (MQ=255)

      aaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagca                                                                                      <  1:3487344‑M2/91‑7 (MQ=255)

      aaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagca                                                                                      <  1:3485830‑M2/91‑7 (MQ=255)

      aaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagca                                                                                      >  1:1681603‑M2/1‑85 (MQ=255)

      aaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagca                                                                                      >  1:1498264‑M2/1‑85 (MQ=255)

      aaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagca                                                                                      >  1:613141‑M2/1‑85 (MQ=255)

       aCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaa                                                                                     >  1:2026047‑M2/1‑84 (MQ=255)

          tatCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaagcg                                                                                  <  1:4114902‑M2/91‑11 (MQ=255)

          tatCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaagcg                                                                                  <  1:3348851‑M2/91‑11 (MQ=255)

           atCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACATAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcgagcgc                                                                                 >  1:3582224‑M2/1‑80 (MQ=255)

           atCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGTGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaagcgc                                                                                 <  1:1947812‑M2/91‑12 (MQ=255)

           atCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaagcgc                                                                                 <  1:413371‑M2/91‑12 (MQ=255)

            tCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaagcgct                                                                                >  1:747181‑M2/1‑79 (MQ=255)

             cGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaagcgctt                                                                               >  1:408038‑M2/1‑78 (MQ=255)

              gAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaagcgcttt                                                                              <  1:2314127‑M2/91‑15 (MQ=255)

                aaaaaCTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTc                                                                            <  1:3237571/91‑1 (MQ=255)

                    aCTGAACAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctata                                                                        >  1:3230692/1‑91 (MQ=255)

                      tGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctatact                                                                      >  1:3914626/1‑91 (MQ=255)

                       gaagaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctatacta                                                                     >  1:428453/1‑91 (MQ=255)

                        aagaaCAATCTTCAGATAAAAACAAGTAATGACGAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctatactat                                                                    <  1:3405041/91‑1 (MQ=255)

                        aagaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCCAGCGCTTTTctatactat                                                                    >  1:1570026/1‑91 (MQ=255)

                         agaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctatactata                                                                   <  1:562615/91‑1 (MQ=255)

                         agaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctatactata                                                                   >  1:248534/1‑91 (MQ=255)

                          gaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatat                                                                  <  1:1922262/91‑1 (MQ=255)

                          gaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatat                                                                  <  1:1921993/91‑1 (MQ=255)

                              gttCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATAtatta                                                              >  1:841762/3‑91 (MQ=255)

                                tCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATattatt                                                            <  1:487484/91‑1 (MQ=255)

                                   tCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTAttttt                                                         <  1:3001663/91‑1 (MQ=255)

                                   tCAGATAAAAACAAATAATAACAAAGCGCGTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTAttttt                                                         <  1:3326035/91‑1 (MQ=255)

                                    cAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCGAGCGCTTTTCTATACTATATATTATTTTTc                                                        <  1:3410322/91‑1 (MQ=255)

                                    cAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTc                                                        >  1:583527/1‑91 (MQ=255)

                                    cAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTc                                                        >  1:4063044/1‑91 (MQ=255)

                                      gATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTa                                                      <  1:1073740/91‑1 (MQ=255)

                                         aaaaaCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATCCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTaaaa                                                   <  1:3598920/91‑1 (MQ=255)

                                          aaaaCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAt                                                  <  1:614139/91‑1 (MQ=255)

                                           aaaCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAtt                                                 >  1:4079922/1‑91 (MQ=255)

                                           aaaCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAtt                                                 >  1:348155/1‑91 (MQ=255)

                                            aaCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAttt                                                <  1:3223592/91‑1 (MQ=255)

                                            aaCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAttt                                                <  1:3222019/91‑1 (MQ=255)

                                             aCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAtttt                                               <  1:3128283/91‑1 (MQ=255)

                                             aCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAtttt                                               <  1:3128807/91‑1 (MQ=255)

                                                 ataataACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAaca                                           >  1:3337371/1‑91 (MQ=255)

                                                 ataataACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAaca                                           <  1:2499118/91‑1 (MQ=255)

                                                  taataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAacac                                          <  1:1764378/91‑1 (MQ=255)

                                                   aataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAcc                                         <  1:2958546/91‑1 (MQ=255)

                                                   aataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAcc                                         <  1:2959188/91‑1 (MQ=255)

                                                    ataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAccc                                        <  1:2593104/91‑1 (MQ=255)

                                                      aaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCctc                                      <  1:2472304/91‑1 (MQ=255)

                                                       aCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTTTACTATATATTATTTTTCTAAAATTTTAACACCctct                                     <  1:3493247/91‑1 (MQ=255)

                                                       aCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTGTACTATATATTATTTTTCTAAAATTTTAACACCctct                                     <  1:3493107/91‑1 (MQ=255)

                                                        cAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCtt                                    <  1:1336779/91‑1 (MQ=255)

                                                         aaaGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTg                                   <  1:1465240/91‑1 (MQ=255)

                                                           aGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAg                                 >  1:2741550/1‑91 (MQ=255)

                                                               cTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGcc                             <  1:1453778/91‑1 (MQ=255)

                                                               cTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGcc                             <  1:1453808/91‑1 (MQ=255)

                                                               cTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGcc                             >  1:242082/1‑91 (MQ=255)

                                                                 tGCTAGTACCTCTTAAAAAGATGATGctagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgtt                           <  1:1338137‑M2/91‑66 (MQ=255)

                                                                 tGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTGTACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTa                           >  1:641747/1‑91 (MQ=255)

                                                                 tGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTa                           >  1:641572/1‑91 (MQ=255)

                                                                  gCTAGTACCTCTTAAAAAGATGATGctagcaagcgctttgttattatttgtttttatctgaagattgttcttccgttttttcgatatgttt                          <  1:1533500‑M2/91‑67 (MQ=255)

                                                                  gCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTAc                          <  1:252373/91‑1 (MQ=255)

                                                                  gCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTAc                          <  1:300294/91‑1 (MQ=255)

                                                                  gCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTAc                          <  1:252709/91‑1 (MQ=255)

                                                                   cTAGTACCTCTTAAAAAGATGATGCTAGCCAGCGCTTTTCTATACTTTATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACa                         <  1:2008346/91‑1 (MQ=255)

                                                                    tAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACaa                        <  1:3210457/91‑1 (MQ=255)

                                                                     aGTACCTCTTAAAAAGATGATGctagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgtttttc                       <  1:2220735‑M2/91‑70 (MQ=255)

                                                                       tACCTCTTAAAAAGATGATGctagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgtttttctg                     <  1:586499‑M2/91‑72 (MQ=255)

                                                                       tACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATaa                     <  1:2490959/91‑1 (MQ=255)

                                                                       tACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATaa                     <  1:479123/91‑1 (MQ=255)

                                                                        aCCTCTTAAAAAGATGATGctagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgtttttctgc                    <  1:1883092‑M2/91‑73 (MQ=255)

                                                                        aCCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAAc                    <  1:544037/91‑1 (MQ=255)

                                                                        aCCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAAc                    <  1:2069279/91‑1 (MQ=255)

                                                                        aCCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAAc                    <  1:1373921/91‑1 (MQ=255)

                                                                        aCCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAAc                    <  1:543341/91‑1 (MQ=255)

                                                                          ctctTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACtt                  <  1:569909/91‑1 (MQ=255)

                                                                          ctctTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACtt                  >  1:1027350/1‑91 (MQ=255)

                                                                          ctctTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACtt                  <  1:2757646/91‑1 (MQ=255)

                                                                          ctctTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACtt                  >  1:1027094/1‑91 (MQ=255)

                                                                          ctctTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACtt                  >  1:2510403/1‑91 (MQ=255)

                                                                          ctctTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACtt                  <  1:366822/91‑1 (MQ=255)

                                                                           tctTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTg                 <  1:3386947/91‑1 (MQ=255)

                                                                           tctTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACGATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTg                 >  1:3512417/1‑91 (MQ=255)

                                                                             ttAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGAt               <  1:3739884/91‑1 (MQ=255)

                                                                              tAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATc              >  1:3337805/1‑91 (MQ=255)

                                                                               aaaaaGATGATGctagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgtttttctgcatcaatt             <  1:2477565‑M2/91‑80 (MQ=255)

                                                                                 aaaGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGc           <  1:2474449/91‑1 (MQ=255)

                                                                                   aGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCa         >  1:171446/1‑91 (MQ=255)

                                                                                    gatgatGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCat        <  1:3340409/91‑1 (MQ=255)

                                                                                    gatgatGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCat        <  1:1816536/91‑1 (MQ=255)

                                                                                     atgatgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCata       >  1:1774950/1‑91 (MQ=255)

                                                                                      tgatgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCatat      <  1:2418129/91‑1 (MQ=255)

                                                                                        atgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCt    <  1:1343607/91‑1 (MQ=255)

                                                                                        atgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCt    <  1:1343560/91‑1 (MQ=255)

                                                                                        atgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCCGCCATctct    >  1:3727807/1‑91 (MQ=255)

                                                                                        atgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCAGCCATctct    >  1:3728936/1‑91 (MQ=255)

                                                                                         tgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTa   >  1:1803834/1‑91 (MQ=255)

                                                                                         tgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTa   >  1:10566/1‑91 (MQ=255)

                                                                                          gCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTaa  >  1:3360509/1‑91 (MQ=255)

                                                                                          gCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCGGCCATATCTaa  >  1:3768820/1‑91 (MQ=255)

CAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAA  >  USA300TCH1516_ALE/2455690‑2455870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.