BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2455760	58 (0.590)	6 (0.070)	6/132	NT	9.0%	intergenic (+18/+48)	lyrA/rpiA	Lysostaphin resistance protein A/Ribose‑5‑phosphate isomerase A
*	?	USA300TCH1516_ALE	= 2455780	73 (0.900)	6 (0.070)	6/132	NT	9.0%	intergenic (+38/+28)	lyrA/rpiA	Lysostaphin resistance protein A/Ribose‑5‑phosphate isomerase A

Only 100 of 108 total aligned reads displayed.

TCAGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAAT  >  USA300TCH1516_ALE/2455674‑2455849

tcaGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTAcc                                                                                       <  1:3075073/91‑1 (MQ=255)

   gTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACctct                                                                                    <  1:630318/91‑1 (MQ=255)

      gTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTaa                                                                                 <  1:2436666/91‑1 (MQ=255)

       tAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTaaa                                                                                <  1:586693/91‑1 (MQ=255)

        aaTTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGcatcatcttttt                                                                               <  1:2477565‑M1/91‑13 (MQ=255)

         aTTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTaaaaa                                                                              <  1:1528847/91‑1 (MQ=255)

           tGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAga                                                                            >  1:3100752/1‑91 (MQ=255)

           tGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAga                                                                            <  1:1599543/91‑1 (MQ=255)

           tGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAga                                                                            >  1:3473065/1‑91 (MQ=255)

            gATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAgat                                                                           <  1:1243303/91‑1 (MQ=255)

            gATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAgat                                                                           >  1:2267274/1‑91 (MQ=255)

              tGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAgatga                                                                         >  1:3411675/1‑91 (MQ=255)

               gCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGcatcatctttttaagaggt                                                                        <  1:1883092‑M1/91‑20 (MQ=255)

                cAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAGACAAATAAGAACTAAGCGCTTGCTAGTACCTCTTAAAAAGatgatg                                                                       <  1:3304610/91‑1 (MQ=255)

                cAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGcatcatctttttaagaggta                                                                       <  1:586499‑M1/91‑21 (MQ=255)

                  gAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGcatcatctttttaagaggtact                                                                     <  1:2220735‑M1/91‑23 (MQ=255)

                     aaaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagc                                                                  >  1:2745867‑M2/1‑86 (MQ=255)

                     aaaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagc                                                                  <  1:3545834‑M2/91‑6 (MQ=255)

                     aaaCATATCGAAAAAACGGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGcatcatctttttaagaggtactagc                                                                  <  1:1533500‑M1/91‑26 (MQ=255)

                      aaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGcatcatctttttaagaggtactagca                                                                 <  1:1338137‑M1/91‑27 (MQ=255)

                      aaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagca                                                                 >  1:1681603‑M2/1‑85 (MQ=255)

                      aaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagca                                                                 <  1:3487344‑M2/91‑7 (MQ=255)

                      aaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagca                                                                 <  1:3485830‑M2/91‑7 (MQ=255)

                      aaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagca                                                                 >  1:1498264‑M2/1‑85 (MQ=255)

                      aaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagca                                                                 >  1:613141‑M2/1‑85 (MQ=255)

                        cATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaag                                                               <  1:2742418‑M2/91‑9 (MQ=255)

                          tatCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaagcg                                                             <  1:4114902‑M2/91‑11 (MQ=255)

                          tatCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaagcg                                                             <  1:3348851‑M2/91‑11 (MQ=255)

                           atCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGTGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaagcgc                                                            <  1:1947812‑M2/91‑12 (MQ=255)

                           atCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaagcgc                                                            <  1:413371‑M2/91‑12 (MQ=255)

                            tCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaagcgct                                                           >  1:747181‑M2/1‑79 (MQ=255)

                             cGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaagcgctt                                                          >  1:408038‑M2/1‑78 (MQ=255)

                              gAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaagcgcttt                                                         <  1:2314127‑M2/91‑15 (MQ=255)

                                aaaaaCTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTc                                                       <  1:3237571/91‑1 (MQ=255)

                                    aCTGAACAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctata                                                   >  1:3230692/1‑91 (MQ=255)

                                      tGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctatact                                                 >  1:3914626/1‑91 (MQ=255)

                                       gaagaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctatacta                                                >  1:428453/1‑91 (MQ=255)

                                        aagaaCAATCTTCAGATAAAAACAAGTAATGACGAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctatactat                                               <  1:3405041/91‑1 (MQ=255)

                                         agaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctatactata                                              >  1:248534/1‑91 (MQ=255)

                                          gaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatat                                             <  1:1921993/91‑1 (MQ=255)

                                          gaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatat                                             <  1:1922262/91‑1 (MQ=255)

                                             cAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATAtatt                                          >  1:1652745/1‑91 (MQ=255)

                                              gttCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATAtatta                                         >  1:841762/3‑91 (MQ=255)

                                                tCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATattatt                                       <  1:487484/91‑1 (MQ=255)

                                                   tCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTAttttt                                    <  1:3001663/91‑1 (MQ=255)

                                                   tCAGATAAAAACAAATAATAACAAAGCGCGTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTAttttt                                    <  1:3326035/91‑1 (MQ=255)

                                                   tCAGATAAAAACAAATAATAACAAAGCGCATGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTAttttt                                    <  1:3326141/91‑1 (MQ=255)

                                                    cAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTc                                   >  1:583527/1‑91 (MQ=255)

                                                    cAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTc                                   >  1:4063044/1‑91 (MQ=255)

                                                      gATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTa                                 <  1:1073740/91‑1 (MQ=255)

                                                         aaaaaCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATCCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTaaaa                              <  1:3598920/91‑1 (MQ=255)

                                                          aaaaCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAt                             <  1:614139/91‑1 (MQ=255)

                                                           aaaCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAtt                            >  1:348155/1‑91 (MQ=255)

                                                           aaaCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAtt                            >  1:4079922/1‑91 (MQ=255)

                                                            aaCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAttt                           <  1:3223592/91‑1 (MQ=255)

                                                            aaCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAttt                           <  1:3222019/91‑1 (MQ=255)

                                                             aCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAtttt                          <  1:3128807/91‑1 (MQ=255)

                                                                 ataataACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAaca                      <  1:2499118/91‑1 (MQ=255)

                                                                 ataataACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAaca                      >  1:3337371/1‑91 (MQ=255)

                                                                  taataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAacac                     <  1:1764378/91‑1 (MQ=255)

                                                                   aataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAcc                    <  1:2958546/91‑1 (MQ=255)

                                                                   aataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAcc                    <  1:2959188/91‑1 (MQ=255)

                                                                    ataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAccc                   <  1:2593104/91‑1 (MQ=255)

                                                                      aaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCctc                 <  1:2472304/91‑1 (MQ=255)

                                                                       aCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTTTACTATATATTATTTTTCTAAAATTTTAACACCctct                <  1:3493247/91‑1 (MQ=255)

                                                                       aCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTGTACTATATATTATTTTTCTAAAATTTTAACACCctct                <  1:3493107/91‑1 (MQ=255)

                                                                        cAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCtt               <  1:1336779/91‑1 (MQ=255)

                                                                         aaaGCGCTTGCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttc              <  1:2314127‑M1/91‑78 (MQ=255)

                                                                         aaaGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTg              <  1:1465240/91‑1 (MQ=255)

                                                                          aaGCGCTTGCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcg             >  1:408038‑M1/1‑13 (MQ=255)

                                                                          aaGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGa             >  1:442861/1‑91 (MQ=255)

                                                                           aGCGCTTGCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcga            >  1:747181‑M1/1‑12 (MQ=255)

                                                                           aGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAg            >  1:2741550/1‑91 (MQ=255)

                                                                            gcgcTTGCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgat           <  1:413371‑M1/91‑81 (MQ=255)

                                                                            gcgcTTGCTAGcatcatctttttaagaggtactagcaagcactttgttattatttgtttttatctgaagattgttcttcagttttttcgat           <  1:1947812‑M1/91‑81 (MQ=255)

                                                                            gcgcTCGCTAGcatcatctttttaagaggtactagcaagcgctatgttattatttgtttttatctgaagattgttcttcagttttttcgat           >  1:3582224‑M1/1‑11 (MQ=255)

                                                                             cgcTTGCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgata          <  1:4114902‑M1/91‑82 (MQ=255)

                                                                             cgcTTGCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgata          <  1:3348851‑M1/91‑82 (MQ=255)

                                                                               cTTGCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatg        <  1:2742418‑M1/91‑84 (MQ=255)

                                                                               cTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGcc        >  1:242082/1‑91 (MQ=255)

                                                                               cTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGcc        <  1:1453808/91‑1 (MQ=255)

                                                                               cTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGcc        <  1:1453778/91‑1 (MQ=255)

                                                                                ttGCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgt       >  1:2026047‑M1/1‑7 (MQ=255)

                                                                                 tGCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgtt      >  1:1681603‑M1/1‑6 (MQ=255)

                                                                                 tGCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgtt      <  1:3485830‑M1/91‑86 (MQ=255)

                                                                                 tGCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgtt      >  1:1498264‑M1/1‑6 (MQ=255)

                                                                                 tGCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgtt      <  1:3487344‑M1/91‑86 (MQ=255)

                                                                                 tGCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgtt      >  1:613141‑M1/1‑6 (MQ=255)

                                                                                 tGCTAGTACCTCTTAAAAAGATGATGctagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgtt      <  1:1338137‑M2/91‑66 (MQ=255)

                                                                                 tGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTGTACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTa      >  1:641747/1‑91 (MQ=255)

                                                                                 tGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTa      >  1:641572/1‑91 (MQ=255)

                                                                                  gCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgttt     >  1:2745867‑M1/1‑5 (MQ=255)

                                                                                  gCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgttt     <  1:3545834‑M1/91‑87 (MQ=255)

                                                                                  gCTAGTACCTCTTAAAAAGATGATGctagcaagcgctttgttattatttgtttttatctgaagattgttcttccgttttttcgatatgttt     <  1:1533500‑M2/91‑67 (MQ=255)

                                                                                  gCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTAc     <  1:300294/91‑1 (MQ=255)

                                                                                  gCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTAc     <  1:252373/91‑1 (MQ=255)

                                                                                   cTAGTACCTCTTAAAAAGATGATGCTAGCCAGCGCTTTTCTATACTTTATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACa    <  1:2008346/91‑1 (MQ=255)

                                                                                    tAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACaa   >  1:2267379/1‑91 (MQ=255)

                                                                                    tAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACaa   <  1:3210457/91‑1 (MQ=255)

                                                                                     aGTACCTCTTAAAAAGATGATGctagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgtttttc  <  1:2220735‑M2/91‑70 (MQ=255)

TCAGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAAT  >  USA300TCH1516_ALE/2455674‑2455849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.