| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2461467 = | 117 (1.190) | 12 (0.130) | 9/146 | NT | 10.2% | intergenic (‑193/+38) | natA_2/yhaI | ABC transporter ATP‑binding protein NatA/Inner membrane protein YhaI |
| ? | USA300TCH1516_ALE | 2461499 = | 104 (1.160) | intergenic (‑225/+6) | natA_2/yhaI | ABC transporter ATP‑binding protein NatA/Inner membrane protein YhaI | |||||
AAAAAGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2461563‑2461467‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatatttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTT > USA300TCH1516_ALE/2461499‑2461587 AAAAAGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTCATGTTATAAATATCTCGGCACAGTGATGCTGGG > 1:600888/1‑91AAAAAGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGG < 1:3072777/91‑1AAAAAGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGG > 1:1897362/1‑91 AAAGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGAT < 1:400480/91‑1 AGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATAT > 1:1495215/1‑91 AGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATAT > 1:3943055/1‑91 AGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATAT > 1:1916483/1‑91 AGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATAT < 1:180614/91‑1 CGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATATTT > 1:11061/1‑91 CGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATATTT > 1:4089389/1‑91 AATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGT > 1:1874448/1‑91 TGATATAAATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATG > 1:696101/1‑91 GATATAAATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGT > 1:651617/1‑91 TATAAATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTAC > 1:57606/1‑91 TATAAATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTAC > 1:3386748/1‑91 TATAAATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTAC > 1:1797897/1‑91 TAAATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACAC > 1:544289/1‑91 AAATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACG > 1:1906637/1‑91 ATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCT > 1:1755420/1‑91 TATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTT > 1:1774228/1‑91 TATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTT > 1:1613492/1‑91 GGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCG > 1:2236531/1‑91 ATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGG > 1:3233483/1‑91 ATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGG < 1:2442547/91‑1 ATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGG > 1:2269593/1‑91 TTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGT < 1:2913744/91‑1 TTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTT > 1:1519342/1‑91 TTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTT < 1:1231480/91‑1 TTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTT < 1:1231196/91‑1 TTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTT < 1:2317121/91‑1 TTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTT < 1:1146181/91‑1 TTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTT < 1:1027204/91‑1 AAAAAGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2461563‑2461467‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatatttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTT > USA300TCH1516_ALE/2461499‑2461587 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |