BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2461467 =	117 (1.190)	12 (0.130)	9/146	NT	10.2%	intergenic (‑193/+38)	natA_2/yhaI	ABC transporter ATP‑binding protein NatA/Inner membrane protein YhaI
*	?	USA300TCH1516_ALE	2461499 =	104 (1.160)	12 (0.130)	9/146	NT	10.2%	intergenic (‑225/+6)	natA_2/yhaI	ABC transporter ATP‑binding protein NatA/Inner membrane protein YhaI

Only 100 of 150 total aligned reads displayed.

TAAGTATCATTAGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTTGA  >  USA300TCH1516_ALE/2461409‑2461589

  gtacatctgaaacaccgaaaacaccggaagaaacagataatcaattgtaatgatatAAATATCCCAGCATCATTGTGCCGAGATATTtata                                                                                          >  1:3386748‑M1/57‑91 (MQ=255)

  gtacatctgaaacaccgaaaacaccggaagaaacagataatcaattgtaatgatatAAATATCCCAGCATCATTGTGCCGAGATATTtata                                                                                          >  1:57606‑M1/57‑91 (MQ=255)

  aGTATCATTAGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTtata                                                                                          <  1:2256072/91‑1 (MQ=255)

     catctgaaacaccgaaaacaccggaagaaacagataatcaattgtaatgatatAAATATCCCAGCATCATTGTGCCGAGATATTTATATCa                                                                                       >  1:696101‑M1/54‑91 (MQ=255)

      tCATTAGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCAt                                                                                      <  1:2256848/91‑1 (MQ=255)

      tCATTAGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCAt                                                                                      <  1:703920/91‑1 (MQ=255)

       cATTAGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCAtt                                                                                     >  1:3720264/1‑91 (MQ=255)

        aTTAGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTa                                                                                    >  1:753359/1‑91 (MQ=255)

        aTTAGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTa                                                                                    <  1:1511592/91‑1 (MQ=255)

          tAGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAGAAATATCCCAGCATCATTGTGCCGTGATATTTATATCATTACa                                                                                  <  1:1768449/91‑1 (MQ=255)

          tAGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACa                                                                                  <  1:1077721/91‑1 (MQ=255)

           aGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACaa                                                                                 <  1:1524186/91‑1 (MQ=255)

            gCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAAt                                                                                <  1:761184/91‑1 (MQ=255)

             acaccgaaaacaccggaagaaacagataatcaattgtaatgatatAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAAtt                                                                               >  1:1874448‑M1/46‑91 (MQ=255)

              aCTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTg                                                                              <  1:1170691/91‑1 (MQ=255)

                    tatGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATc                                                                        <  1:2337223/91‑1 (MQ=255)

                    tatGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATc                                                                        <  1:2334689/91‑1 (MQ=255)

                    tatGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATc                                                                        >  1:3295718/1‑91 (MQ=255)

                    tatGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATc                                                                        >  1:1788576/1‑91 (MQ=255)

                      tGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTg                                                                      >  1:1196740/1‑91 (MQ=255)

                      tGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTg                                                                      <  1:132783/91‑1 (MQ=255)

                      tGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTg                                                                      <  1:567002/91‑1 (MQ=255)

                      tGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTg                                                                      <  1:2280161/91‑1 (MQ=255)

                        ttttttCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGtt                                                                    <  1:3343760/91‑1 (MQ=255)

                        ttttttCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGtt                                                                    <  1:3344100/91‑1 (MQ=255)

                           tttCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTttct                                                                 >  1:2870018/1‑91 (MQ=255)

                            ttCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTttctt                                                                >  1:1098556/1‑91 (MQ=255)

                             tCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTttcttc                                                               <  1:2147310/91‑1 (MQ=255)

                              ccATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTcc                                                              >  1:3444083/1‑91 (MQ=255)

                               cATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCg                                                             <  1:244032/91‑1 (MQ=255)

                                aTGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCgg                                                            <  1:1994435/91‑1 (MQ=255)

                                aTGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCgg                                                            <  1:2009290/91‑1 (MQ=255)

                                 tGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGgt                                                           >  1:64018/1‑91 (MQ=255)

                                 tGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGgt                                                           >  1:1663223/1‑91 (MQ=255)

                                 tGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGgt                                                           >  1:1131200/1‑91 (MQ=255)

                                 tGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGgt                                                           >  1:485708/1‑91 (MQ=255)

                                 tGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGgt                                                           >  1:287612/1‑91 (MQ=255)

                                     tttATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGttt                                                       <  1:2049189/91‑1 (MQ=255)

                                     tttATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGttt                                                       <  1:2277976/91‑1 (MQ=255)

                                     tttATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGttt                                                       <  1:536482/91‑1 (MQ=255)

                                     tttATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGttt                                                       >  1:1277302/1‑91 (MQ=255)

                                        aTTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCg                                                    <  1:3445884/91‑1 (MQ=255)

                                         ttGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCgg                                                   >  1:115891/1‑91 (MQ=255)

                                         ttGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCgg                                                   <  1:1551196/91‑1 (MQ=255)

                                          tGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGgt                                                  <  1:836781/91‑1 (MQ=255)

                                          tGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGgt                                                  <  1:4100723/91‑1 (MQ=255)

                                           gCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGgtg                                                 <  1:2507602/91‑1 (MQ=255)

                                            ccTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGgtgt                                                <  1:3997816/91‑1 (MQ=255)

                                            ccTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGgtgt                                                >  1:2912499/1‑91 (MQ=255)

                                            aattgtaatgatataaatatctcggcacaatgatgctgggatatttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGgtgt                                                >  1:1874448‑M2/47‑91 (MQ=255)

                                             cTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGtt                                               <  1:543226/91‑1 (MQ=255)

                                              ttATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGttt                                              <  1:1330158/91‑1 (MQ=255)

                                               tATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTc                                             <  1:1198524/91‑1 (MQ=255)

                                                aTTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCa                                            <  1:3747354/91‑1 (MQ=255)

                                                 tttGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAg                                           <  1:3707017/91‑1 (MQ=255)

                                                 tttGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAg                                           <  1:798510/91‑1 (MQ=255)

                                                 tttGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAg                                           <  1:3716897/91‑1 (MQ=255)

                                                 tttGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAg                                           >  1:1782715/1‑91 (MQ=255)

                                                  ttGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGa                                          <  1:2733248/91‑1 (MQ=255)

                                                  ttGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGa                                          <  1:2732529/91‑1 (MQ=255)

                                                     tAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGt                                       >  1:3460821/1‑91 (MQ=255)

                                                     tAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGt                                       >  1:3538965/1‑91 (MQ=255)

                                                     tAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGt                                       >  1:2323022/1‑91 (MQ=255)

                                                     gatataaatatctcggcacaatgatgctgggatatttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGt                                       >  1:651617‑M2/38‑91 (MQ=255)

                                                      aaaaaaaTATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTa                                      >  1:2620032/1‑91 (MQ=255)

                                                      aaaaaaaTATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTa                                      >  1:1277497/1‑91 (MQ=255)

                                                      aaaaaaaTATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTa                                      <  1:715316/91‑1 (MQ=255)

                                                       tataaatatctcggcacaatgatgctgggatatttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTac                                     >  1:3386748‑M2/36‑91 (MQ=255)

                                                       tataaatatctcggcacaatgatgctgggatatttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTac                                     >  1:1797897‑M2/36‑91 (MQ=255)

                                                       aaaaaaTATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTac                                     <  1:3956550/91‑1 (MQ=255)

                                                       aaaaaaTATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTac                                     <  1:3956082/91‑1 (MQ=255)

                                                        aaaaaTATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTaca                                    <  1:560576/91‑1 (MQ=255)

                                                         taaatatctcggcacaatgatgctgggatatttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTacac                                   >  1:544289‑M2/34‑91 (MQ=255)

                                                         aaaaTATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTacac                                   >  1:2591886/1‑91 (MQ=255)

                                                         aaaaTATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTacac                                   <  1:3138002/91‑1 (MQ=255)

                                                         aaaaTATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTacac                                   <  1:1768445/91‑1 (MQ=255)

                                                          aaatatctcggcacaatgatgctgggatatttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACg                                  >  1:1906637‑M2/33‑91 (MQ=255)

                                                          AAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACg                                  >  1:11061‑M1/1‑91 (MQ=255)

                                                          AAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACg                                  >  1:4089389‑M1/1‑91 (MQ=255)

                                                            ATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCt                                >  1:1916483‑M1/1‑91 (MQ=255)

                                                            ATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCt                                <  1:180614‑M1/91‑1 (MQ=255)

                                                            ATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCt                                >  1:1495215‑M1/1‑91 (MQ=255)

                                                             tatctcggcacaatgatgctgggatatttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCtt                               >  1:1613492‑M2/30‑91 (MQ=255)

                                                              ATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCttt                              <  1:400480‑M1/91‑1 (MQ=255)

                                                                CCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCttttt                            <  1:3072777‑M1/91‑1 (MQ=255)

                                                                CCCAGCATCACTGTGCCGAGATATTTATAACATGACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCttttt                            >  1:600888‑M1/1‑91 (MQ=255)

                                                                 ccAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTc                           <  1:1119553/91‑1 (MQ=255)

                                                                  cAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTcc                          <  1:4032242/91‑1 (MQ=255)

                                                                   aGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCg                         >  1:278432/1‑91 (MQ=255)

                                                                    gCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCgg                        <  1:2482302/91‑1 (MQ=255)

                                                                         atTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGttt                   <  1:3840650/91‑1 (MQ=255)

                                                                                cGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGt            >  1:2815577/1‑91 (MQ=255)

                                                                                      atttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTgg      >  1:3233483‑M2/5‑91 (MQ=255)

                                                                                      atttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTgg      <  1:2442547‑M2/87‑1 (MQ=255)

                                                                                       tttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGt     <  1:2913744‑M2/88‑1 (MQ=255)

                                                                                        ttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGtt    <  1:1027204‑M2/89‑1 (MQ=255)

                                                                                        ttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGtt    <  1:1231196‑M2/89‑1 (MQ=255)

                                                                                        ttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGtt    <  1:1231480‑M2/89‑1 (MQ=255)

                                                                                        ttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGtt    <  1:2317121‑M2/89‑1 (MQ=255)

                                                                                          atatCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTTGa  <  1:386645/91‑1 (MQ=255)

TAAGTATCATTAGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTTGA  >  USA300TCH1516_ALE/2461409‑2461589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.