| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2475076 | 92 (0.940) | 5 (0.060) | 4/142 | NT | 5.7% | coding (1180/1383 nt) | tcaA | Membrane‑associated protein TcaA |
| ? | USA300TCH1516_ALE | = 2475098 | 84 (0.960) | coding (1158/1383 nt) | tcaA | Membrane‑associated protein TcaA | |||||
CGGTAATCTTATCACCATGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2474980‑2475076‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcatcataTATAAAAAAAGGATCATCTTTTTATGATGATGTAAAGAAGCGTGTATCTAAAGGAAGTTTAATGATGATTAGTTCACCACAAA < USA300TCH1516_ALE/2475098‑2475016 CGGTAATCTTATCACCATGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATC > 1:2284649/1‑91CGGTAATCTTATCACCATGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATC < 1:3805348/91‑1 GTAATCTTATCACCATGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCAT > 1:1740419/1‑91 GTAATCTTATCACCATGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCAT > 1:2815747/1‑91 GTAATCTTATCACCATGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCAT > 1:887001/1‑91 TCTTATCACCATGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATA > 1:1078490/1‑91 TCTTATCACCATGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATA > 1:1922510/1‑91 AATTTGTGGTGAACTAATCATCATTAAACTTCGTTTAGATACACGCTTCTTTACATCATCATATATAAAAAAAGGATCATCTTTTTATGAT < 1:3527485/91‑1 TTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATATATAAAAAAAGGATCATCTTTTTATGATGA < 1:4056230/91‑1 TGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATATATAAAAAAAGGATCATCTTTTTATGATGATG < 1:2822562/91‑1 TGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATATATAAAAAAAGGATCATCTTTTTATGATGATG < 1:3040894/91‑1 GTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATATATAAAAAAAGGATCATCTTTTTATGATGATGTAAA < 1:2443103/91‑1 ATCATCATATATAAAAAAAGGATCATCTTTTTATGATGATGTAAAGAAGCGTGTATCTAAAGGAAGTTTAATGATGATTAGTTCACCACAA < 1:3644111/91‑1 ATCATCATATATAAAAAAAGGATCATCTTTTTATGATGATGTAAAGAAGCGTGTATCTAAAGGAAGTTTAATGATGATTAGTTCACCACAA < 1:888741/91‑1 TCATCATATATAAAAAAAGGATCATCTTTTTATGATGATGTAAAGAAGCGTGTATCTAAAGGAAGTTTAATGATGATTAGTTCACCACAAA < 1:1797725/91‑1 CGGTAATCTTATCACCATGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2474980‑2475076‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcatcataTATAAAAAAAGGATCATCTTTTTATGATGATGTAAAGAAGCGTGTATCTAAAGGAAGTTTAATGATGATTAGTTCACCACAAA < USA300TCH1516_ALE/2475098‑2475016 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |