BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2475076	92 (0.940)	5 (0.060)	4/142	NT	5.7%	coding (1180/1383 nt)	tcaA	Membrane‑associated protein TcaA
*	?	USA300TCH1516_ALE	= 2475098	84 (0.960)	5 (0.060)	4/142	NT	5.7%	coding (1158/1383 nt)	tcaA	Membrane‑associated protein TcaA

Only 100 of 107 total aligned reads displayed.

ATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAAGAATTCTATCAATTTGTTCTTC  >  USA300TCH1516_ALE/2475008‑2475188

aTCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTtata                                                                                            >  1:2396918/1‑91 (MQ=255)

aTCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTtata                                                                                            >  1:1316409/1‑91 (MQ=255)

aTCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTtata                                                                                            >  1:1184949/1‑91 (MQ=255)

        tttGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATAtatgatga                                                                                    <  1:1797725‑M2/91‑9 (MQ=255)

         ttGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATAtatgatgat                                                                                   <  1:888741‑M2/91‑10 (MQ=255)

         ttGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATAtatgatgat                                                                                   <  1:3644111‑M2/91‑10 (MQ=255)

           gtggtgAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAc                                                                                 <  1:2964344/91‑1 (MQ=255)

           gtggtgAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAc                                                                                 <  1:2964357/91‑1 (MQ=255)

            tggtgAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGACGATAca                                                                                <  1:3228124/91‑1 (MQ=255)

             ggtgAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAcaa                                                                               <  1:432823/91‑1 (MQ=255)

             ggtgAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAcaa                                                                               <  1:432802/91‑1 (MQ=255)

              gtgAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAcaaa                                                                              <  1:3833461/91‑1 (MQ=255)

              gtgAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAcaaa                                                                              >  1:447397/1‑91 (MQ=255)

              gtgAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAcaaa                                                                              >  1:3937542/1‑91 (MQ=255)

                 aaCTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAcaaaatc                                                                           <  1:2483185/91‑1 (MQ=255)

                 aaCTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAcaaaatc                                                                           <  1:3999415/91‑1 (MQ=255)

                  aCTAATCATCATTAAACTTCCTTTAGATACACGCTTCATTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAcaaaatca                                                                          >  1:3517671/1‑91 (MQ=255)

                     aaTCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAcaaaatcaaaa                                                                       >  1:885656/1‑91 (MQ=255)

                     aaTCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAcaaaatcaaaa                                                                       >  1:2182810/1‑91 (MQ=255)

                     aaTCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAcaaaatcaaaa                                                                       >  1:886453/1‑91 (MQ=255)

                       tcatcaTTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACaaaatcaaaatc                                                                     <  1:191573/91‑1 (MQ=255)

                       tcatcaTTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACaaaatcaaaatc                                                                     <  1:4085000/91‑1 (MQ=255)

                       tcatcaTTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACaaaatcaaaatc                                                                     <  1:4084977/91‑1 (MQ=255)

                        catcatTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATcc                                                                    >  1:2416150/1‑91 (MQ=255)

                        catcatTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATcc                                                                    >  1:2416151/1‑91 (MQ=255)

                          tcatTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGa                                                                  <  1:486575/91‑1 (MQ=255)

                           catTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGAc                                                                 >  1:2730243/1‑91 (MQ=255)

                           catTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGAc                                                                 >  1:2798911/1‑91 (MQ=255)

                            atTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACt                                                                <  1:2563114/91‑1 (MQ=255)

                            atTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACt                                                                >  1:2329696/1‑91 (MQ=255)

                             ttAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTg                                                               >  1:1029446/1‑91 (MQ=255)

                              tAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGa                                                              <  1:3478352/91‑1 (MQ=255)

                               aaaCTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGAt                                                             >  1:1362671/1‑91 (MQ=255)

                               aaaCTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGAt                                                             >  1:2988566/1‑91 (MQ=255)

                               aaaCTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGAt                                                             >  1:1595988/1‑91 (MQ=255)

                                 aCTTCCTTTAGATACACGCTTCTTTACATCAACATAAAAAGATGATCCTTTTTTTATGTATGATGATACAAAATCAAAATCCGACTGATTa                                                           >  1:3688212/1‑91 (MQ=255)

                                    tCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAAc                                                        >  1:2575736/1‑91 (MQ=255)

                                      cTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACgc                                                      <  1:3328911/91‑1 (MQ=255)

                                      cTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACgc                                                      <  1:3631378/91‑1 (MQ=255)

                                        ttAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACgcag                                                    <  1:2355406/91‑1 (MQ=255)

                                        ttAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTATTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACgcag                                                    <  1:3305474/91‑1 (MQ=255)

                                           gATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCat                                                 >  1:1888203/1‑91 (MQ=255)

                                            aTACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCatt                                                >  1:1101544/1‑91 (MQ=255)

                                               cacGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAATCGCAGCattatt                                             <  1:3200445/91‑1 (MQ=255)

                                               cacGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCattatt                                             <  1:1978649/91‑1 (MQ=255)

                                                acGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTc                                            >  1:783178/1‑91 (MQ=255)

                                                   cttcttTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCt                                         >  1:985911/1‑91 (MQ=255)

                                                     tcttTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATCCAAAATCAAAATCCGACTGATTAAACGCATCATTATTCGCTaa                                       >  1:4140808/1‑91 (MQ=255)

                                                     tcttTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTaa                                       >  1:3897243/1‑91 (MQ=255)

                                                     tcttTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTaa                                       >  1:1941827/1‑91 (MQ=255)

                                                      cttTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTaaa                                      >  1:538095/1‑91 (MQ=255)

                                                       tttACATCATCATAAAAAGATGATCCTTTTTTTATAtatgatgatgtaaagaagcgtgtatctaaaggaagtttaatgatgattagttcac                                     <  1:2443103‑M2/91‑56 (MQ=255)

                                                        ttACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGa                                    >  1:1092764/1‑91 (MQ=255)

                                                        ttACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGa                                    <  1:2447973/91‑1 (MQ=255)

                                                         tACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGaa                                   >  1:3271339/1‑91 (MQ=255)

                                                         tACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGaa                                   >  1:2958169/1‑91 (MQ=255)

                                                           catcatcatAAAAAGATGATCCTTTTTTTATAtatgatgatgtaaagaagcgtgtatctaaaggaagtttaatgatgattagttcaccaca                                 <  1:3040894‑M2/91‑60 (MQ=255)

                                                           catcatcatAAAAAGATGATCCTTTTTTTATAtatgatgatgtaaagaagcgtgtatctaaaggaagtttaatgatgattagttcaccaca                                 <  1:2822562‑M2/91‑60 (MQ=255)

                                                           catcatcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAata                                 <  1:3236088/91‑1 (MQ=255)

                                                             tcatcatAAAAAGATGATCCTTTTTTTATAtatgatgatgtaaagaagcgtgtatctaaaggaagtttaatgatgattagttcaccacaaa                               <  1:4056230‑M2/91‑62 (MQ=255)

                                                             tcatcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATc                               >  1:1362908/1‑91 (MQ=255)

                                                             tcatcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATc                               >  1:3633772/1‑91 (MQ=255)

                                                             tcatcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATc                               >  1:1953611/1‑91 (MQ=255)

                                                              catcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATcc                              <  1:3166670/91‑1 (MQ=255)

                                                               atcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCa                             >  1:289313/1‑91 (MQ=255)

                                                                tcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAGAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAg                            <  1:214248/91‑1 (MQ=255)

                                                                tcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAg                            <  1:1110875/91‑1 (MQ=255)

                                                                tcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAg                            <  1:3676821/91‑1 (MQ=255)

                                                                tcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAg                            <  1:1110730/91‑1 (MQ=255)

                                                                tcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAg                            <  1:392569/91‑1 (MQ=255)

                                                                tcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAg                            >  1:1185364/1‑91 (MQ=255)

                                                                 catAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGc                           >  1:1351946/1‑91 (MQ=255)

                                                                  atAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCa                          >  1:1522606/1‑91 (MQ=255)

                                                                  atAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCa                          >  1:330909/1‑91 (MQ=255)

                                                                   tAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCaa                         <  1:14819/91‑1 (MQ=255)

                                                                   tAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCaa                         >  1:565835/1‑91 (MQ=255)

                                                                   tAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCaa                         <  1:2808280/91‑1 (MQ=255)

                                                                    aaaaaGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCaaa                        >  1:1023181/1‑91 (MQ=255)

                                                                    aaaaaGATGATCCTTTTTTTATATAAGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCaaa                        <  1:3869195/91‑1 (MQ=255)

                                                                        aGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAAGAAt                    <  1:3899895/91‑1 (MQ=255)

                                                                        aGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAAGAAt                    <  1:3337316/91‑1 (MQ=255)

                                                                        aGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAAGAAt                    >  1:1315659/1‑91 (MQ=255)

                                                                         gatgatCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATGCAGCAAAGAAtt                   <  1:3177594/91‑1 (MQ=255)

                                                                         gatgatCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAAGAAtt                   <  1:1631949/91‑1 (MQ=255)

                                                                         gatgatCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAAGAAtt                   <  1:1632213/91‑1 (MQ=255)

                                                                          atgatCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAAGAATTc                  <  1:2503262/91‑1 (MQ=255)

                                                                          atgatCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAAGAATTc                  <  1:2326553/91‑1 (MQ=255)

                                                                          atgatCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAAGAATTc                  >  1:3012459/1‑91 (MQ=255)

                                                                           tgatCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAAGAATTCt                 >  1:2812091/1‑91 (MQ=255)

                                                                            gatCCTTTTTTTATATATTATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAAGAATTCTa                <  1:2477686/91‑1 (MQ=255)

                                                                             atCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAAGAATTCTAt               >  1:3097383/1‑91 (MQ=255)

                                                                              tCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAAGAATTCTATc              <  1:1723533/91‑1 (MQ=255)

                                                                                cTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAAGAATTCTATCaa            >  1:3188941/1‑91 (MQ=255)

                                                                                 tttttttATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAAGAATTCTATCAAt           <  1:2564953/91‑1 (MQ=255)

                                                                                   tttttATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAAGAATTCTATCAAttt         >  1:1100501/1‑91 (MQ=255)

                                                                                     tttATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAAGAATTCTATCAATTTGt       <  1:2168193/91‑1 (MQ=255)

                                                                                        atatatGATGATACAAAATCAAAATCCGACTGATTAACCGCAGCATTATTCACTAAAGAATATCCTGCAAAGAATTCTATCAATTGGttct    >  1:3855173/1‑91 (MQ=255)

                                                                                          atatGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAAGAATTCTATCAATTTGttcttc  >  1:1226400/1‑91 (MQ=255)

                                                                                          atatGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAAGAATTCTATCAATTTGttcttc  >  1:2272682/1‑91 (MQ=255)

                                                                                          atatGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAAGAATTCTATCAATTTGttcttc  <  1:2141373/91‑1 (MQ=255)

ATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAAGAATTCTATCAATTTGTTCTTC  >  USA300TCH1516_ALE/2475008‑2475188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.