BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2475076	92 (0.940)	5 (0.060)	4/142	NT	5.7%	coding (1180/1383 nt)	tcaA	Membrane‑associated protein TcaA
*	?	USA300TCH1516_ALE	= 2475098	84 (0.960)	5 (0.060)	4/142	NT	5.7%	coding (1158/1383 nt)	tcaA	Membrane‑associated protein TcaA

Only 100 of 135 total aligned reads displayed.

TCTTATCACCATGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAA  >  USA300TCH1516_ALE/2474986‑2475166

tCTTATCACCATGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATA                                                                                            >  1:1922510‑M1/1‑91 (MQ=255)

tCTTATCACCATGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATA                                                                                            >  1:1078490‑M1/1‑91 (MQ=255)

 cTTATCACCATGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATaa                                                                                           <  1:2154172/91‑1 (MQ=255)

 cTTATCACCATGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATaa                                                                                           <  1:3414798/91‑1 (MQ=255)

   tATCACCATGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATaaaa                                                                                         >  1:2505556/1‑91 (MQ=255)

    aTCACCATGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATaaaaa                                                                                        >  1:2430357/1‑91 (MQ=255)

      cACCATGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAga                                                                                      <  1:2748685/91‑1 (MQ=255)

        ccATGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAgatg                                                                                    <  1:1725084/91‑1 (MQ=255)

         cATGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAgatga                                                                                   <  1:2122307/91‑1 (MQ=255)

         cATGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAgatga                                                                                   >  1:402389/1‑91 (MQ=255)

          aTGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAgatgat                                                                                  >  1:839020/1‑91 (MQ=255)

          aTGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAgatgat                                                                                  >  1:884984/1‑91 (MQ=255)

          aTGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAgatgat                                                                                  >  1:3297759/1‑91 (MQ=255)

          aTGCTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAgatgat                                                                                  <  1:3735336/91‑1 (MQ=255)

           tGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATc                                                                                 <  1:385406/91‑1 (MQ=255)

           tGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATc                                                                                 <  1:1432215/91‑1 (MQ=255)

            gTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGTTACACGCTTCTTTACATCATCATAAAAAGATGATcc                                                                                >  1:1214954/1‑91 (MQ=255)

            gTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATcc                                                                                <  1:2777308/91‑1 (MQ=255)

            gTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATcc                                                                                <  1:693052/91‑1 (MQ=255)

            gTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTGTAGATACACGCTTCTTTACATCATCATAAAAAGATGATcc                                                                                <  1:690866/91‑1 (MQ=255)

              ttttCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCtt                                                                              >  1:2942492/1‑91 (MQ=255)

                ttCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCtttt                                                                            <  1:959883/91‑1 (MQ=255)

                 tCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCttttt                                                                           >  1:1302455/1‑91 (MQ=255)

                 tCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCttttt                                                                           >  1:1303334/1‑91 (MQ=255)

                  cAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCtttttt                                                                          >  1:1194170/1‑91 (MQ=255)

                  cAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCttcttt                                                                          >  1:3268431/1‑91 (MQ=255)

                   aGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCttttttt                                                                         >  1:604072/1‑91 (MQ=255)

                     cATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTtat                                                                       <  1:2744143/91‑1 (MQ=255)

                      aTCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTtata                                                                      >  1:1184949/1‑91 (MQ=255)

                      aTCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTtata                                                                      >  1:2396918/1‑91 (MQ=255)

                              tttGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAtataaaaaaaggatcatctttttatgatga                                                              <  1:4056230‑M1/91‑31 (MQ=255)

                              tttGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATAtatgatga                                                              <  1:1797725‑M2/91‑9 (MQ=255)

                               ttGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATAtatgatgat                                                             <  1:888741‑M2/91‑10 (MQ=255)

                               ttGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATAtatgatgat                                                             <  1:3644111‑M2/91‑10 (MQ=255)

                                tgtgGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAtataaaaaaaggatcatctttttatgatgatg                                                            <  1:3040894‑M1/91‑33 (MQ=255)

                                tgtgGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAtataaaaaaaggatcatctttttatgatgatg                                                            <  1:2822562‑M1/91‑33 (MQ=255)

                                 gtggtgAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAc                                                           <  1:2964357/91‑1 (MQ=255)

                                   ggtgAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAcaa                                                         <  1:432802/91‑1 (MQ=255)

                                   ggtgAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAcaa                                                         <  1:432823/91‑1 (MQ=255)

                                    gtgAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAtataaaaaaaggatcatctttttatgatgatgtaaa                                                        <  1:2443103‑M1/91‑37 (MQ=255)

                                    gtgAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAcaaa                                                        <  1:3833461/91‑1 (MQ=255)

                                    gtgAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAcaaa                                                        >  1:3937542/1‑91 (MQ=255)

                                       aaCTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAcaaaatc                                                     <  1:2483185/91‑1 (MQ=255)

                                        aCTAATCATCATTAAACTTCCTTTAGATACACGCTTCATTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAcaaaatca                                                    >  1:3517671/1‑91 (MQ=255)

                                           aaTCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAcaaaatcaaaa                                                 >  1:2182810/1‑91 (MQ=255)

                                           aaTCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATAcaaaatcaaaa                                                 >  1:886453/1‑91 (MQ=255)

                                             tcatcaTTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACaaaatcaaaatc                                               <  1:4085000/91‑1 (MQ=255)

                                             tcatcaTTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACaaaatcaaaatc                                               <  1:4084966/91‑1 (MQ=255)

                                             tcatcaTTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACaaaatcaaaatc                                               <  1:4084977/91‑1 (MQ=255)

                                              catcatTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATcc                                              >  1:2416150/1‑91 (MQ=255)

                                                tcatTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGa                                            <  1:486575/91‑1 (MQ=255)

                                                  atTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACt                                          >  1:2329696/1‑91 (MQ=255)

                                                  atTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACt                                          <  1:2563114/91‑1 (MQ=255)

                                                   ttAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTg                                         >  1:1029446/1‑91 (MQ=255)

                                                    tAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGa                                        <  1:3478352/91‑1 (MQ=255)

                                                     aaaCTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGAt                                       >  1:2988566/1‑91 (MQ=255)

                                                     aaaCTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGAt                                       >  1:1362671/1‑91 (MQ=255)

                                                     aaaCTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGAt                                       >  1:1595988/1‑91 (MQ=255)

                                                       aCTTCCTTTAGATACACGCTTCTTTACATCAACATAAAAAGATGATCCTTTTTTTATGTATGATGATACAAAATCAAAATCCGACTGATTa                                     >  1:3688212/1‑91 (MQ=255)

                                                          tCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAAc                                  >  1:2575736/1‑91 (MQ=255)

                                                            cTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACgc                                <  1:3631378/91‑1 (MQ=255)

                                                              ttAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACgcag                              <  1:2355406/91‑1 (MQ=255)

                                                              ttAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTATTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACgcag                              <  1:3305474/91‑1 (MQ=255)

                                                                 gATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCat                           >  1:1888203/1‑91 (MQ=255)

                                                                  aTACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCatt                          >  1:1101544/1‑91 (MQ=255)

                                                                   tACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCatta                         <  1:3062580/91‑1 (MQ=255)

                                                                     cacGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAATCGCAGCattatt                       <  1:3200445/91‑1 (MQ=255)

                                                                      acGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTc                      >  1:783178/1‑91 (MQ=255)

                                                                         cttcttTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCt                   >  1:985911/1‑91 (MQ=255)

                                                                           tcttTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATCCAAAATCAAAATCCGACTGATTAAACGCATCATTATTCGCTaa                 >  1:4140808/1‑91 (MQ=255)

                                                                           tcttTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTaa                 >  1:3897243/1‑91 (MQ=255)

                                                                           tcttTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTaa                 >  1:1429747/1‑91 (MQ=255)

                                                                           tcttTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTaa                 >  1:1941827/1‑91 (MQ=255)

                                                                            cttTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTaaa                >  1:538095/1‑91 (MQ=255)

                                                                             tttACATCATCATAAAAAGATGATCCTTTTTTTATAtatgatgatgtaaagaagcgtgtatctaaaggaagtttaatgatgattagttcac               <  1:2443103‑M2/91‑56 (MQ=255)

                                                                               tACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGaa             >  1:2958169/1‑91 (MQ=255)

                                                                                 catcatcatAAAAAGATGATCCTTTTTTTATAtatgatgatgtaaagaagcgtgtatctaaaggaagtttaatgatgattagttcaccaca           <  1:2822562‑M2/91‑60 (MQ=255)

                                                                                 catcatcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAata           <  1:3236088/91‑1 (MQ=255)

                                                                                  atcatcatAtataaaaaaaggatcatctttttatgatgatgtaaagaagcgtgtatctaaaggaagtttaatgatgattagttcaccacaa          <  1:888741‑M1/91‑83 (MQ=255)

                                                                                   tcatcatAtataaaaaaaggatcatctttttatgatgatgtaaagaagcgtgtatctaaaggaagtttaatgatgattagttcaccacaaa         <  1:1797725‑M1/91‑84 (MQ=255)

                                                                                   tcatcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATc         >  1:3633772/1‑91 (MQ=255)

                                                                                   tcatcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATc         >  1:1362908/1‑91 (MQ=255)

                                                                                   tcatcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATc         >  1:1953611/1‑91 (MQ=255)

                                                                                    catcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATcc        <  1:3166670/91‑1 (MQ=255)

                                                                                     atcatAAAAAGATGATCCTTTTTTTATAtatgatgatgtaaagaagcgtgtatctaaacgaagtttaatgatgattagttcaccacaaatt       <  1:3527485‑M2/91‑64 (MQ=255)

                                                                                     atcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCa       >  1:289313/1‑91 (MQ=255)

                                                                                      tcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAGAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAg      <  1:214248/91‑1 (MQ=255)

                                                                                      tcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAg      <  1:1110875/91‑1 (MQ=255)

                                                                                      tcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAg      >  1:1185364/1‑91 (MQ=255)

                                                                                      tcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAg      <  1:1110730/91‑1 (MQ=255)

                                                                                      tcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAg      <  1:3676821/91‑1 (MQ=255)

                                                                                      tcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAg      <  1:2165903/91‑1 (MQ=255)

                                                                                      tcatAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAg      <  1:392569/91‑1 (MQ=255)

                                                                                       catAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGc     >  1:1351946/1‑91 (MQ=255)

                                                                                        atAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCa    >  1:330909/1‑91 (MQ=255)

                                                                                         tAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCaa   >  1:565835/1‑91 (MQ=255)

                                                                                         tAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCaa   <  1:14819/91‑1 (MQ=255)

                                                                                         tAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCaa   <  1:2808280/91‑1 (MQ=255)

                                                                                          aaaaaGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCaaa  >  1:1023181/1‑91 (MQ=255)

                                                                                          aaaaaGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCaaa  >  1:2552958/1‑91 (MQ=255)

TCTTATCACCATGTTTTTCAGCATCTATAATTTGTGGTGAACTAATCATCATTAAACTTCCTTTAGATACACGCTTCTTTACATCATCATAAAAAGATGATCCTTTTTTTATATATGATGATACAAAATCAAAATCCGACTGATTAAACGCAGCATTATTCGCTAAAGAATATCCAGCAAA  >  USA300TCH1516_ALE/2474986‑2475166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.