| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2494136 = | 83 (0.840) | 10 (0.110) | 5/150 | NT | 10.9% | intergenic (‑162/+70) | USA300HOU_RS12835/USA300HOU_RS12845 | Ferredoxin‑‑NADP reductase/hypothetical protein |
| ? | USA300TCH1516_ALE | 2494184 = | 86 (0.930) | intergenic (‑210/+22) | USA300HOU_RS12835/USA300HOU_RS12845 | Ferredoxin‑‑NADP reductase/hypothetical protein | |||||
ACGTGATGAGTCTTTTAAAAAATAATATAACTAGAACTAAAAAATATACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2494230‑2494136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgtATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGAAAAATAGCAAC > USA300TCH1516_ALE/2494184‑2494272 ACGTGATGAGTCTTTTAAAAAATAATATAACTAGAACTAAAAAATATACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGT < 1:4053060/91‑1 CGTGATGAGTCTTTTAAAAAATAATATAACTAGAACTAAAAAATATACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTG > 1:1649575/1‑91 CGTGATGAGTCTTTTAAAAAATAATATAACTAGAACTAAAAAATATACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTG > 1:2598771/1‑91 GTGATGAGTCTTTTAAAAAATAATATAACTAGAACTAAAAAATATACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGT > 1:1547366/1‑91 GTGATGAGTCTTTTAAAAAATAATAGAACTAGAACTAAAAAATATACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGT < 1:3861964/91‑1 TGATGAGTCTTTTAAAAAATAATATAACTAGAACTAAAAAATATACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTG > 1:1331901/1‑91 TGATGAGTCTTTTAAAAAATAATATAACTAGAACTAAAAAATATACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTG > 1:420365/1‑91 GATGAGTCTTTTAAAAAATAATATAACTAGAACTAAAAAATATACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGT < 1:1060556/91‑1 TAATATAACTAGAACTAAAAAATATACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTATATTTTTTAGTTCTAGT > 1:2938924/1‑91 ATACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTATATTTTTTAGTTCTAGTTATATTATTTTATAAAAGACTCA > 1:3763772/1‑91 ATACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTATATTTTTTAGTTCTAGTTATATTATTTTATAAAAGACTCA > 1:3763679/1‑91 TACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCAT > 1:3018448/1‑91 TACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCAT > 1:217559/1‑91 AAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTT > 1:3898219/1‑91 AAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTT > 1:3897901/1‑91 AAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTT > 1:3896550/1‑91 AAAGGAACATTGTTGTTTCTTACTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTT > 1:3518481/1‑91 AGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTA > 1:3789551/1‑91 TGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGAAAAATAGC > 1:3282502/1‑91 TGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGAAAAATAGC < 1:408411/91‑1 TGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGAAAAATAGC < 1:238260/91‑1 TGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGAAAAATAGC < 1:976015/91‑1 GTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGAAAAATAGCAAC < 1:3023407/91‑1 ACGTGATGAGTCTTTTAAAAAATAATATAACTAGAACTAAAAAATATACACATCTTTCAAAGGAACATTGTTGTTTCTTACTTTGAAAGGTGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2494230‑2494136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgtATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGAAAAATAGCAAC > USA300TCH1516_ALE/2494184‑2494272 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |