BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2494136 =	83 (0.840)	10 (0.110)	5/150	NT	10.9%	intergenic (‑162/+70)	USA300HOU_RS12835/USA300HOU_RS12845	Ferredoxin‑‑NADP reductase/hypothetical protein
*	?	USA300TCH1516_ALE	2494184 =	86 (0.930)	10 (0.110)	5/150	NT	10.9%	intergenic (‑210/+22)	USA300HOU_RS12835/USA300HOU_RS12845	Ferredoxin‑‑NADP reductase/hypothetical protein

Only 100 of 107 total aligned reads displayed.

AAAGCCATTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATC  >  USA300TCH1516_ALE/2494046‑2494226

aaaGCCATTATACTATTAATATTTATATTGTTAAAATAAATCGCATATTTAGCCATGAATTATCAATAACTATCCCAGGACAATATaaaaa                                                                                            >  1:4144288/1‑91 (MQ=255)

 gttgctatttttccttttaagacaagcaattcttaaagaaccacgtgatgagtcttttaaaaaataatataactagaactaaaaaatatac                                                                                           <  1:3023407‑M1/2‑1 (MQ=255)

 aaGCCATTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAac                                                                                           >  1:2912262/1‑91 (MQ=255)

  aGCCATTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAaca                                                                                          <  1:3385072/91‑1 (MQ=255)

  aGCCATTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAaca                                                                                          <  1:3388168/91‑1 (MQ=255)

    gctatttttccttttaagacaagcaattcttaaagaaccacgtgatgagtcttttaaaaaataatataactagaactaaaaaatatacaca                                                                                        <  1:238260‑M1/5‑1 (MQ=255)

    gctatttttccttttaagacaagcaattcttaaagaaccacgtgatgagtcttttaaaaaataatataactagaactaaaaaatatacaca                                                                                        >  1:3282502‑M1/87‑91 (MQ=255)

    gctatttttccttttaagacaagcaattcttaaagaaccacgtgatgagtcttttaaaaaataatataactagaactaaaaaatatacaca                                                                                        <  1:408411‑M1/5‑1 (MQ=255)

      aTTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACAcc                                                                                      >  1:774956/1‑91 (MQ=255)

      aTTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACAcc                                                                                      >  1:3834893/1‑91 (MQ=255)

          taCTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTc                                                                                  <  1:2293601/91‑1 (MQ=255)

          taCTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTc                                                                                  >  1:3655346/1‑91 (MQ=255)

           aCTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCa                                                                                 <  1:1465786/91‑1 (MQ=255)

           aCTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTGCa                                                                                 <  1:621974/91‑1 (MQ=255)

            cTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCaa                                                                                >  1:1809313/1‑91 (MQ=255)

               ttAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGt                                                                             >  1:3262551/1‑91 (MQ=255)

                tAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTa                                                                            >  1:3518806/1‑91 (MQ=255)

                   tatTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGa                                                                         <  1:1643201/91‑1 (MQ=255)

                     tttATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGaaa                                                                       <  1:1069489/91‑1 (MQ=255)

                        atatTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAaacaa                                                                    >  1:1691892/1‑91 (MQ=255)

                         tatTGTTAAAATAAATCGCATAGTTAGCCATGGATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAaacaac                                                                   >  1:4035892/1‑91 (MQ=255)

                         tatTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAaacaac                                                                   <  1:1740247/91‑1 (MQ=255)

                         tatTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAaacaac                                                                   <  1:397700/91‑1 (MQ=255)

                             gTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATg                                                               >  1:3232122/1‑91 (MQ=255)

                             gTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATg                                                               >  1:1649160/1‑91 (MQ=255)

                              ttAAAATGAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGt                                                              <  1:2069586/91‑1 (MQ=255)

                              ttAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGt                                                              <  1:481809/91‑1 (MQ=255)

                               tAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGtt                                                             >  1:2034695/1‑91 (MQ=255)

                               tAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGtt                                                             >  1:2034943/1‑91 (MQ=255)

                                 aaataaatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTcc                                                           >  1:1071300/1‑91 (MQ=255)

                                 aaataaatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTcc                                                           >  1:1071167/1‑91 (MQ=255)

                                  aataaatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCt                                                          <  1:2132241/91‑1 (MQ=255)

                                  aataaatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCt                                                          <  1:3884744/91‑1 (MQ=255)

                                    aagaaccacgtgatgagtcttttaaaaaataatataactagaactaaaaaatatACACATCTTTCAAAGTAAGAAACAACAATGTTCCttt                                                        >  1:3518481‑M1/55‑91 (MQ=255)

                                    aagaaccacgtgatgagtcttttaaaaaataatataactagaactaaaaaatatACACACCTTTCAAAGTAAGAAACAACAATGTTCCttt                                                        >  1:3896550‑M1/55‑91 (MQ=255)

                                    aagaaccacgtgatgagtcttttaaaaaataatataactagaactaaaaaatatACACACCTTTCAAAGTAAGAAACAACAATGTTCCttt                                                        >  1:3897901‑M1/55‑91 (MQ=255)

                                    aagaaccacgtgatgagtcttttaaaaaataatataactagaactaaaaaatatACACACCTTTCAAAGTAAGAAACAACAATGTTCCttt                                                        >  1:3898219‑M1/55‑91 (MQ=255)

                                     aaatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTg                                                       >  1:2340317/1‑91 (MQ=255)

                                      aatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGa                                                      <  1:2162808/91‑1 (MQ=255)

                                      aatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGa                                                      <  1:2162521/91‑1 (MQ=255)

                                      aatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGa                                                      <  1:3464780/91‑1 (MQ=255)

                                      aatCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGa                                                      <  1:1413493/91‑1 (MQ=255)

                                       atCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGaa                                                     >  1:970321/1‑91 (MQ=255)

                                       atCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGaa                                                     >  1:1416371/1‑91 (MQ=255)

                                         cGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAg                                                   >  1:2376730/1‑91 (MQ=255)

                                         cGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAg                                                   >  1:245231/1‑91 (MQ=255)

                                           cATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGAt                                                 >  1:1491419/1‑91 (MQ=255)

                                           cATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGAt                                                 >  1:629997/1‑91 (MQ=255)

                                            aTAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTACGAAACAACAATGTTCCTTTGAAAGAtg                                                <  1:1332272/91‑1 (MQ=255)

                                              aGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGAtgtg                                              <  1:361753/91‑1 (MQ=255)

                                              aGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGAtgtg                                              <  1:2689653/91‑1 (MQ=255)

                                              aGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGAtgtg                                              <  1:2646559/91‑1 (MQ=255)

                                              aGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGAtgtg                                              <  1:2646583/91‑1 (MQ=255)

                                              aGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTAAAAGTAAGAAACAACAATGTTCCTTTGAAAGAtgtg                                              >  1:3154837/1‑91 (MQ=255)

                                                ttAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGta                                            >  1:2577622/1‑91 (MQ=255)

                                                ttAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGta                                            <  1:1913608/91‑1 (MQ=255)

                                                ttAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGta                                            >  1:3002807/1‑91 (MQ=255)

                                                atgagtcttttaaaaaataatataactagaactaaaaaatatACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGta                                            >  1:3018448‑M1/43‑91 (MQ=255)

                                                 tgagtcttttataaaataatataactagaactaaaaaatatACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGtat                                           >  1:3763679‑M1/42‑91 (MQ=255)

                                                 tgagtcttttataaaataatataactagaactaaaaaatatACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGtat                                           >  1:3763772‑M1/42‑91 (MQ=255)

                                                 tAGCCATGAATTATCAATAACTATCCCATGACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGtat                                           <  1:3327029/91‑1 (MQ=255)

                                                 tAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGtat                                           >  1:2281526/1‑91 (MQ=255)

                                                  aGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGtata                                          >  1:2667008/1‑91 (MQ=255)

                                                     cATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATAttt                                       >  1:697744/1‑91 (MQ=255)

                                                         aaTTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTa                                   >  1:3590623/1‑91 (MQ=255)

                                                            tATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGtt                                >  1:1396507/1‑91 (MQ=255)

                                                             aTCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTc                               >  1:188376/1‑91 (MQ=255)

                                                               cAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTa                             >  1:949967/1‑91 (MQ=255)

                                                               cAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTa                             >  1:4058269/1‑91 (MQ=255)

                                                               cAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTa                             >  1:949968/1‑91 (MQ=255)

                                                                 aTAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGt                           >  1:4091760/1‑91 (MQ=255)

                                                                 aTAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGt                           <  1:3841472/91‑1 (MQ=255)

                                                                  tAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGtt                          >  1:2414882/1‑91 (MQ=255)

                                                                   aaCTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTta                         >  1:3217989/1‑91 (MQ=255)

                                                                   aaCTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTta                         <  1:462979/91‑1 (MQ=255)

                                                                    aCTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTtat                        >  1:347705/1‑91 (MQ=255)

                                                                    aCTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTtat                        <  1:3098074/91‑1 (MQ=255)

                                                                       aTCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTAtatt                     >  1:3989228/1‑91 (MQ=255)

                                                                       aTCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTAtatt                     <  1:3201588/91‑1 (MQ=255)

                                                                       aTCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTAtatt                     >  1:1066080/1‑91 (MQ=255)

                                                                       aTCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTAtatt                     <  1:3201738/91‑1 (MQ=255)

                                                                        tCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTAtatta                    >  1:3658289/1‑91 (MQ=255)

                                                                        tCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTAtatta                    >  1:663438/1‑91 (MQ=255)

                                                                        tCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTAtatta                    >  1:663425/1‑91 (MQ=255)

                                                                        tCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTAtatta                    >  1:613060/1‑91 (MQ=255)

                                                                        tCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTAtatta                    >  1:3578319/1‑91 (MQ=255)

                                                                        actagaactaaaaaatatACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTAtatta                    >  1:2938924‑M1/19‑91 (MQ=255)

                                                                           cATCACAATATAAAAACACACCTTTCAAAGTAAGAGACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTAttt                 <  1:1086520/91‑1 (MQ=255)

                                                                           cATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTAttt                 <  1:2768627/91‑1 (MQ=255)

                                                                           cATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTAttt                 <  1:1835958/91‑1 (MQ=255)

                                                                              cacaATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTAtttttt              >  1:3588050/1‑91 (MQ=255)

                                                                               acaATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATTTTTTTTAGTTCTAGTTATATTATTTTTTa             <  1:326559/91‑1 (MQ=255)

                                                                               acaATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTa             <  1:1335138/91‑1 (MQ=255)

                                                                               acaATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTa             <  1:3896525/91‑1 (MQ=255)

                                                                                caATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTaa            <  1:970295/91‑1 (MQ=255)

                                                                                 aaTATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTaaa           >  1:843753/1‑91 (MQ=255)

                                                                                      aaaaaCACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACt      <  1:1358148/91‑1 (MQ=255)

                                                                                       aaaaCACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtc     >  1:1573058/1‑91 (MQ=255)

                                                                                        aaaCACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtca    <  1:2350472/91‑1 (MQ=255)

                                                                                          ACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtcatc  <  1:1060556‑M1/91‑1 (MQ=255)

AAAGCCATTATACTATTAATATTTATATTGTTAAAATAAATCGCATAGTTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATC  >  USA300TCH1516_ALE/2494046‑2494226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.