BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2494136 =	83 (0.840)	10 (0.110)	5/150	NT	10.9%	intergenic (‑162/+70)	USA300HOU_RS12835/USA300HOU_RS12845	Ferredoxin‑‑NADP reductase/hypothetical protein
*	?	USA300TCH1516_ALE	2494184 =	86 (0.930)	10 (0.110)	5/150	NT	10.9%	intergenic (‑210/+22)	USA300HOU_RS12835/USA300HOU_RS12845	Ferredoxin‑‑NADP reductase/hypothetical protein

Only 100 of 122 total aligned reads displayed.

TTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGAAAAATAGCAAC  >  USA300TCH1516_ALE/2494094‑2494272

ttAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGta                                                                                          >  1:2577622/1‑91 (MQ=255)

ttAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGta                                                                                          >  1:3002807/1‑91 (MQ=255)

atgagtcttttaaaaaataatataactagaactaaaaaatatACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGta                                                                                          >  1:3018448‑M1/43‑91 (MQ=255)

 tgagtcttttataaaataatataactagaactaaaaaatatACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGtat                                                                                         >  1:3763679‑M1/42‑91 (MQ=255)

 tgagtcttttataaaataatataactagaactaaaaaatatACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGtat                                                                                         >  1:3763772‑M1/42‑91 (MQ=255)

 tAGCCATGAATTATCAATAACTATCCCATGACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGtat                                                                                         <  1:3327029/91‑1 (MQ=255)

 tAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGtat                                                                                         >  1:2281526/1‑91 (MQ=255)

     cATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATAttt                                                                                     >  1:697744/1‑91 (MQ=255)

         aaTTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTa                                                                                 >  1:3590623/1‑91 (MQ=255)

             aTCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTc                                                                             >  1:188376/1‑91 (MQ=255)

               cAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTa                                                                           >  1:3366878/1‑91 (MQ=255)

               cAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTa                                                                           >  1:949968/1‑91 (MQ=255)

               cAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTa                                                                           >  1:949967/1‑91 (MQ=255)

               cAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTa                                                                           >  1:4058269/1‑91 (MQ=255)

                 aTAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGt                                                                         <  1:3841472/91‑1 (MQ=255)

                 aTAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGt                                                                         <  1:426987/91‑1 (MQ=255)

                 aTAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGt                                                                         >  1:4091760/1‑91 (MQ=255)

                  tAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGtt                                                                        >  1:2414882/1‑91 (MQ=255)

                   aaCTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTta                                                                       <  1:462979/91‑1 (MQ=255)

                   aaCTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTta                                                                       >  1:3217989/1‑91 (MQ=255)

                    aCTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTtat                                                                      >  1:347705/1‑91 (MQ=255)

                       aTCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTAtatt                                                                   <  1:3201738/91‑1 (MQ=255)

                       aTCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTAtatt                                                                   <  1:3201588/91‑1 (MQ=255)

                       aTCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTAtatt                                                                   >  1:1066080/1‑91 (MQ=255)

                        tCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTAtatta                                                                  >  1:613060/1‑91 (MQ=255)

                        tCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTAtatta                                                                  >  1:663438/1‑91 (MQ=255)

                        tCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTAtatta                                                                  >  1:663425/1‑91 (MQ=255)

                        actagaactaaaaaatatACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTAtatta                                                                  >  1:2938924‑M1/19‑91 (MQ=255)

                           cATCACAATATAAAAACACACCTTTCAAAGTAAGAGACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTAttt                                                               <  1:1086520/91‑1 (MQ=255)

                           cATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTAttt                                                               <  1:1835958/91‑1 (MQ=255)

                           cATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTAttt                                                               <  1:2768627/91‑1 (MQ=255)

                              cacaATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTAtttttt                                                            >  1:3588050/1‑91 (MQ=255)

                               acaATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTa                                                           <  1:1335138/91‑1 (MQ=255)

                                caATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTaa                                                          <  1:970295/91‑1 (MQ=255)

                                 aaTATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTaaa                                                         >  1:843753/1‑91 (MQ=255)

                                      aaaaaCACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACt                                                    <  1:1358148/91‑1 (MQ=255)

                                       aaaaCACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtc                                                   >  1:1573058/1‑91 (MQ=255)

                                        atacacatctttcaaaggaacattgttgtttcttactttgaaaggtgtgtATATTTTTTAGTTCTAGTTATATTATTTTATAAAAGACtca                                                  >  1:3763679‑M2/51‑91 (MQ=255)

                                        aaaCACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtca                                                  <  1:2350472/91‑1 (MQ=255)

                                         tacacatctttcaaaggaacattgttgtttcttactttgaaaggtgtgtATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtcat                                                 >  1:217559‑M2/50‑91 (MQ=255)

                                         tacacatctttcaaaggaacattgttgtttcttactttgaaaggtgtgtATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtcat                                                 >  1:3018448‑M2/50‑91 (MQ=255)

                                          ACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtcatc                                                <  1:1060556‑M1/91‑1 (MQ=255)

                                           CACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtcatca                                               >  1:420365‑M1/1‑91 (MQ=255)

                                           CACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACtcatca                                               >  1:1331901‑M1/1‑91 (MQ=255)

                                            ACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTCTATTATTTTTTAAAAGACTCATCAc                                              <  1:3861964‑M1/91‑1 (MQ=255)

                                            ACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCAc                                              >  1:1547366‑M1/1‑91 (MQ=255)

                                             CACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACg                                             >  1:2598771‑M1/1‑91 (MQ=255)

                                             CACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACg                                             >  1:1649575‑M1/1‑91 (MQ=255)

                                              ACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGt                                            <  1:4053060‑M1/91‑1 (MQ=255)

                                               ccTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTg                                           <  1:286813/91‑1 (MQ=255)

                                                cTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTgg                                          <  1:2120315/91‑1 (MQ=255)

                                                  ttCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGtt                                        <  1:3826155/91‑1 (MQ=255)

                                                  ttCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGtt                                        <  1:3826220/91‑1 (MQ=255)

                                                   tCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTc                                       <  1:3220973/91‑1 (MQ=255)

                                                   tCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTc                                       <  1:3220918/91‑1 (MQ=255)

                                                     aaaggaacattgttgtttcttactttgaaaggtgtgtATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCtt                                     >  1:3897901‑M2/38‑91 (MQ=255)

                                                     aaaggaacattgttgtttcttactttgaaaggtgtgtATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCtt                                     >  1:3896550‑M2/38‑91 (MQ=255)

                                                     aaaggaacattgttgtttcttactttgaaaggtgtgtATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCtt                                     >  1:3898219‑M2/38‑91 (MQ=255)

                                                     aaaggaacattgttgtttcttactttgaaagatgtgtATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCtt                                     >  1:3518481‑M2/38‑91 (MQ=255)

                                                     aaaGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCtt                                     <  1:4061081/91‑1 (MQ=255)

                                                     aaaGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCtt                                     >  1:1420416/1‑91 (MQ=255)

                                                      aaGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCttt                                    <  1:2651646/91‑1 (MQ=255)

                                                       aggaacattgttgtttcttactttgaaaggtgtgtATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTa                                   >  1:3789551‑M2/36‑91 (MQ=255)

                                                       aGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTa                                   >  1:3385018/1‑91 (MQ=255)

                                                       aGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTa                                   >  1:2822258/1‑91 (MQ=255)

                                                       aGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTa                                   >  1:10797/1‑91 (MQ=255)

                                                        gTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTaa                                  >  1:1623411/1‑91 (MQ=255)

                                                         tAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAg                                 >  1:397905/1‑91 (MQ=255)

                                                          aaGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGa                                <  1:1365338/91‑1 (MQ=255)

                                                           aGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGaa                               <  1:1846812/91‑1 (MQ=255)

                                                            gAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAAt                              <  1:1981604/91‑1 (MQ=255)

                                                            gAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAAt                              <  1:2093976/91‑1 (MQ=255)

                                                             aaaCAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAAtt                             <  1:527835/91‑1 (MQ=255)

                                                             aaaCAACAATGTTCCTTTGAAAGATGTGTATATGTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAAtt                             <  1:3405272/91‑1 (MQ=255)

                                                              aacaacAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTg                            >  1:1277857/1‑91 (MQ=255)

                                                               acaacaATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGc                           <  1:2862288/91‑1 (MQ=255)

                                                               acaacaATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGc                           >  1:1545872/1‑91 (MQ=255)

                                                                caacaaTGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCt                          >  1:372411/1‑91 (MQ=255)

                                                                 aacaaTGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCtt                         <  1:4030939/91‑1 (MQ=255)

                                                                 aacaaTGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCtt                         <  1:4031323/91‑1 (MQ=255)

                                                                 aacaaTGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCtt                         <  1:2896196/91‑1 (MQ=255)

                                                                  acaaTGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTg                        >  1:2913126/1‑91 (MQ=255)

                                                                    aaTGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGATATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTc                      >  1:192610/1‑91 (MQ=255)

                                                                     aTGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCt                     <  1:1651626/91‑1 (MQ=255)

                                                                      tGTTTCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCtt                    >  1:3579440/1‑91 (MQ=255)

                                                                      tGTTCCTTTGAAAGATGTGTATATTTTTTAGTTGTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCtt                    <  1:3390238/91‑1 (MQ=255)

                                                                      tGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCtt                    <  1:242360/91‑1 (MQ=255)

                                                                        ttCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTaa                  >  1:3651967/1‑91 (MQ=255)

                                                                        ttCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTaa                  >  1:3652071/1‑91 (MQ=255)

                                                                        ttCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTaa                  <  1:1747200/91‑1 (MQ=255)

                                                                         tCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTaaa                 <  1:2680606/91‑1 (MQ=255)

                                                                         tCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTaaa                 <  1:1004460/91‑1 (MQ=255)

                                                                           cTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAg               <  1:2741987/91‑1 (MQ=255)

                                                                            tttGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAgg              <  1:1545479/91‑1 (MQ=255)

                                                                            tttGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAgg              <  1:1425693/91‑1 (MQ=255)

                                                                             ttGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGa             <  1:3540211/91‑1 (MQ=255)

                                                                                aaaGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGaaaa          >  1:2043917/1‑91 (MQ=255)

                                                                                    aTGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGAAAAATAg      >  1:230078/1‑91 (MQ=255)

                                                                                     tgtgtATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGAAAAATAGc     >  1:3282502‑M2/6‑91 (MQ=255)

                                                                                        gtATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGAAAAATAGcaac  <  1:3023407‑M2/89‑1 (MQ=255)

TTAGCCATGAATTATCAATAACTATCCCATCACAATATAAAAACACACCTTTCAAAGTAAGAAACAACAATGTTCCTTTGAAAGATGTGTATATTTTTTAGTTCTAGTTATATTATTTTTTAAAAGACTCATCACGTGGTTCTTTAAGAATTGCTTGTCTTAAAAGGAAAAATAGCAAC  >  USA300TCH1516_ALE/2494094‑2494272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.