| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2494782 = | 89 (0.910) | 8 (0.090) | 7/138 | NT | 9.8% | intergenic (‑145/+62) | USA300HOU_RS12845/mnmC_2 | hypothetical protein/tRNA 5‑methylaminomethyl‑2‑thiouridine biosynthesis bifunctional protein MnmC |
| ? | USA300TCH1516_ALE | 2494828 = | 70 (0.830) | intergenic (‑191/+16) | USA300HOU_RS12845/mnmC_2 | hypothetical protein/tRNA 5‑methylaminomethyl‑2‑thiouridine biosynthesis bifunctional protein MnmC | |||||
GAAAACATAGCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2494881‑2494782‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatagctattATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAA > USA300TCH1516_ALE/2494828‑2494917 GAAAACATAGCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGT > 1:2444859/1‑91GAAAACATAGCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGT > 1:356852/1‑91 AAACATAGCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTAT < 1:2694639/91‑1 CATAGCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGC < 1:2538396/91‑1 CATAGCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGC < 1:1335349/91‑1 CATAGCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGC < 1:199416/91‑1 ATAGCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCT > 1:3578493/1‑91 ATAGCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCT > 1:3560733/1‑91 ATAGCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCT > 1:1936114/1‑91 ATAGCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCT > 1:1936324/1‑91 ATAGCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCT > 1:1936351/1‑91 ATAGCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCT > 1:2202419/1‑91 TAGCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTA > 1:3742385/1‑91 AGCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTAT < 1:3781786/91‑1 GCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATT < 1:3344350/91‑1 GCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATT < 1:3385495/91‑1 GCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATT < 1:141899/91‑1 GCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATT > 1:617696/1‑91 GAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTT > 1:719268/1‑91 AAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTT > 1:933313/1‑91 ATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGT > 1:365323/1‑91 AATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTACTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGC > 1:4142390/1‑91 ATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCT > 1:1863118/1‑91 ATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCT > 1:1863102/1‑91 ACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTC > 1:673551/1‑91 CAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCT > 1:1108556/1‑91 TATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATA > 1:805302/1‑91 ATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATAC < 1:547414/91‑1 ATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATAC > 1:1105798/1‑91 TAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACA < 1:1871035/91‑1 AGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAG < 1:2274539/91‑1 GCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGC < 1:1172065/91‑1 GCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGC < 1:1171850/91‑1 CTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCG > 1:277884/1‑91 CTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCG < 1:505956/91‑1 ATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCC < 1:103592/91‑1 TATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAA < 1:2738167/91‑1 GAAAACATAGCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2494881‑2494782‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatagctattATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAA > USA300TCH1516_ALE/2494828‑2494917 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |