| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2497326 = | 131 (1.330) | 7 (0.080) | 5/140 | NT | 6.1% | coding (376/945 nt) | USA300HOU_RS12865 | hypothetical protein |
| ? | USA300TCH1516_ALE | 2497363 = | 102 (1.190) | coding (413/945 nt) | USA300HOU_RS12865 | hypothetical protein | |||||
CAATACGAATTCTACTTTTATTAAGTAATCGTAAGTTACGATTATAATGGTCGGCAATAGTAGTTAAAATTTCTAATGCAAATCTGCTGTGAAATTTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2497425‑2497326‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattttaaCTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTA > USA300TCH1516_ALE/2497363‑2497452 CAATACGAATTCTACTTTTATTAAGTAATCGTAAGTTACGATTATAATGGTCGGCAATAGTAGTTAAAATTTCTAATGCAAATCTGCTGTG < 1:1319707/91‑1CAATACGAATTCTACTTTTATTAAGTAATCGTAAGTTACGATTATAATGATCGGCAATAGTAGTTAAAATTTCTAATGCAAATCTGCTGTG < 1:3592690/91‑1 AATACGAATTCTACTTTTATTAAGTAATCGTAAGTTACGATTATAATGGTCGGCAATAGTAGTTAAAATTTCTAATGCAAATCTGCTGTGA < 1:3878192/91‑1 TACGAATTCTACTTTTATTAAGTAATCGTAAGTTACGATTATAATGGTCGGCAATAGTAGTTAAAATTTCTAATGCAAATCTGCTGTGAAA > 1:3281243/1‑91 TACGAATTCTACTTTTATTAAGTAATCGTAAGTTACGATTATAATGGTCGGCAATAGTAGTTAAAATTTCTAATGCAAATCTGCTGTGAAA > 1:2465156/1‑91 ACGAATTCTACTTTTATTAAGTAATCGTAAGTTACGATTATAATGGTCGGCAATAGTAGTTAAAATTTCTAATGCAAATCTGCTGTGAAAT > 1:3279108/1‑91 ACGAATTCTACTTTTATTAAGTAATCGTAAGTTACGATTATAATGGTCGGCAATAGTAGTTAAAAGTTCTAATGCAAATCTGCTGTGAAAT > 1:3852881/1‑91 GAATTCTACTTTTATTAAGTAATCGTAAGTTACGATTATAATGGTCGGCAATAGTAGTTAAAATTTCTAATGCAAATCTGCTGTGAAATTT < 1:3320577/91‑1 GAATTCTACTTTTATTAAGTAATCGTAAGTTACGATTATAATGGTCGGCAATAGTAGTTAAAATTTCTAATGCAAATCTGCTGTGAAATTT < 1:3813371/91‑1 ATTCTACTTTTATTAAGTAATCGTAAGTTACGATTATAATGGTCGGCAATAGTAGTTAAAATTTCTAATGCAAATCTGCTGTGAAATTTTA > 1:503258/1‑91 TTCTACTTTTATTAAGTAATCGTAAGTTACGATTATAATGGTCGGCAATAGTAGTTAAAATTTCTAATGCAAATCTGCTGTGAAATTTTAA < 1:304647/91‑1 ACGATTATAATGGTCGGCAATAGTAGTTAAAATTTCTAATGCAAATCTGCTGTGAAATTTTAACTACTATTGCCGACCATTATAATCGTAA > 1:3884349/1‑91 GTAGTTAAAATTTCTAATGCAAATCTGCTGTGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGT > 1:42959/1‑91 GTAGTTAAAATTTCTAATGCAAATCTGCTGTGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGT > 1:41760/1‑91 TTAAAATTTCTAATGCAAATCTGCTGTGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAA > 1:2586052/1‑91 AAAATTTCTAATGCAAATCTGCTGTGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATT > 1:781647/1‑91 AAAATTTCTAATGCAAATCTGCTGTGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATT > 1:1457249/1‑91 TTCTAATGCAAAACTGCTGTGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCATAT > 1:3208290/1‑91 AAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAA > 1:35113/1‑91 AAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAA > 1:35727/1‑91 AATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAACAATAAC < 1:3343275/91‑1 AATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAAC < 1:1433447/91‑1 AATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAAC < 1:3205204/91‑1 TTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATT < 1:865286/91‑1 TAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTAC < 1:4132100/91‑1 AACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACT > 1:2356423/1‑91 ACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTA > 1:3031935/1‑91 ACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTA > 1:1497515/1‑91 CAATACGAATTCTACTTTTATTAAGTAATCGTAAGTTACGATTATAATGGTCGGCAATAGTAGTTAAAATTTCTAATGCAAATCTGCTGTGAAATTTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2497425‑2497326‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattttaaCTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTA > USA300TCH1516_ALE/2497363‑2497452 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |