BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2497326 =	131 (1.330)	7 (0.080)	5/140	NT	6.1%	coding (376/945 nt)	USA300HOU_RS12865	hypothetical protein
*	?	USA300TCH1516_ALE	2497363 =	102 (1.190)	7 (0.080)	5/140	NT	6.1%	coding (413/945 nt)	USA300HOU_RS12865	hypothetical protein

Only 100 of 151 total aligned reads displayed.

TTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTAA  >  USA300TCH1516_ALE/2497273‑2497453

tttGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAac                                                                                            >  1:3337557/1‑91 (MQ=255)

 ttGTGATGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAact                                                                                           >  1:182572/1‑91 (MQ=255)

  tgtgACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAacta                                                                                          >  1:3536674/1‑91 (MQ=255)

   gtgACGCTGAAAATGAATTTTTAGAAAATTTATCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAactac                                                                                         >  1:958927/1‑91 (MQ=255)

   gtgACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAactac                                                                                         >  1:596404/1‑91 (MQ=255)

   gtgACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAactac                                                                                         >  1:496283/1‑91 (MQ=255)

   gtgACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAactac                                                                                         <  1:4131517/91‑1 (MQ=255)

   acttttattaagtaatcgtaagttacgattataatggtcggcaatagtagTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAactac                                                                                         >  1:42959‑M1/51‑91 (MQ=255)

    tgACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAactact                                                                                        >  1:1520562/1‑91 (MQ=255)

     gACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAActacta                                                                                       >  1:2311237/1‑91 (MQ=255)

      aCGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTAt                                                                                      <  1:152722/91‑1 (MQ=255)

      aCGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTAt                                                                                      >  1:2367671/1‑91 (MQ=255)

      aCGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTAt                                                                                      <  1:2743421/91‑1 (MQ=255)

       cGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTAtt                                                                                     >  1:1727168/1‑91 (MQ=255)

       cGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTAtt                                                                                     >  1:707432/1‑91 (MQ=255)

        gCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTg                                                                                    >  1:200831/1‑91 (MQ=255)

         cTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGc                                                                                   <  1:1607587/91‑1 (MQ=255)

           gAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCg                                                                                 >  1:1932907/1‑91 (MQ=255)

            aaaaTGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGa                                                                                >  1:1061339/1‑91 (MQ=255)

            aaaaTGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGa                                                                                >  1:2566180/1‑91 (MQ=255)

              aaTGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGAcc                                                                              <  1:1562122/91‑1 (MQ=255)

               aTGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCa                                                                             >  1:1408238/1‑91 (MQ=255)

                tGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCAt                                                                            >  1:338163/1‑91 (MQ=255)

                 gAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCAtt                                                                           >  1:600531/1‑91 (MQ=255)

                  aaTTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATta                                                                          >  1:1741797/1‑91 (MQ=255)

                  aaTTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATta                                                                          <  1:1888873/91‑1 (MQ=255)

                  aaTTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATta                                                                          <  1:704189/91‑1 (MQ=255)

                  aaTTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATta                                                                          >  1:465754/1‑91 (MQ=255)

                   aTTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATtat                                                                         <  1:1452040/91‑1 (MQ=255)

                   aTTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATtat                                                                         <  1:927746/91‑1 (MQ=255)

                    tttttAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATtata                                                                        <  1:2852504/91‑1 (MQ=255)

                     ttttAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATaa                                                                       >  1:155703/1‑91 (MQ=255)

                      tttAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAAt                                                                      <  1:1048303/91‑1 (MQ=255)

                      tttAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAAt                                                                      <  1:966296/91‑1 (MQ=255)

                      tttAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAAt                                                                      <  1:1291229/91‑1 (MQ=255)

                      tttAGAAAATTTACCTAAGCGTGATATTAATGTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAAt                                                                      <  1:1974652/91‑1 (MQ=255)

                       ttAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATc                                                                     <  1:2964432/91‑1 (MQ=255)

                       ttAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATc                                                                     <  1:2962616/91‑1 (MQ=255)

                         aGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGt                                                                   >  1:1322441/1‑91 (MQ=255)

                          gAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTa                                                                  >  1:375930/1‑91 (MQ=255)

                          gAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTa                                                                  >  1:2004329/1‑91 (MQ=255)

                           acgattataatggtcggcaatagtagttaaaatttctaatgcaaatctgctgtgaaattttaaCTACTATTGCCGACCATTATAATCGTaa                                                                 >  1:3884349‑M2/64‑91 (MQ=255)

                             aaTTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACt                                                               <  1:2847680/91‑1 (MQ=255)

                              aTTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACtt                                                              <  1:2410650/91‑1 (MQ=255)

                              aTTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACtt                                                              <  1:61722/91‑1 (MQ=255)

                               tttACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTa                                                             <  1:476753/91‑1 (MQ=255)

                                ttACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTAc                                                            <  1:2893966/91‑1 (MQ=255)

                                  aCCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAAGTTACGa                                                          <  1:2002810/91‑1 (MQ=255)

                                   ccTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAAGTTACGAt                                                         <  1:2975710/91‑1 (MQ=255)

                                    cTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGAtt                                                        <  1:726674/91‑1 (MQ=255)

                                    cTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGAtt                                                        >  1:2452953/1‑91 (MQ=255)

                                    cTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGAtt                                                        <  1:1017890/91‑1 (MQ=255)

                                     tAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAAGTTACGATTa                                                       <  1:1168151/91‑1 (MQ=255)

                                      aaGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTAc                                                      >  1:189206/1‑91 (MQ=255)

                                        gCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACtt                                                    <  1:3491431/91‑1 (MQ=255)

                                                 tAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGt                                           <  1:583804/91‑1 (MQ=255)

                                                 tAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGt                                           <  1:1110081/91‑1 (MQ=255)

                                                 gtagttaaaatttctaatgcaaatctgctgtgaaattttaaCTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGt                                           >  1:41760‑M2/42‑91 (MQ=255)

                                                  aaTTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTa                                          <  1:293429/91‑1 (MQ=255)

                                                  aaTTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTAGTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTa                                          >  1:3299865/1‑91 (MQ=255)

                                                   aTTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAg                                         <  1:1071583/91‑1 (MQ=255)

                                                    tttAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGa                                        >  1:84918/1‑91 (MQ=255)

                                                    tttAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGa                                        <  1:2182884/91‑1 (MQ=255)

                                                    tttAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGa                                        <  1:2257651/91‑1 (MQ=255)

                                                    tttAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGa                                        <  1:1606520/91‑1 (MQ=255)

                                                    tttAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGa                                        >  1:1797392/1‑91 (MQ=255)

                                                     ttaaaatttctaatgcaaatctgctgtgaaattttaaCTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGaa                                       >  1:2586052‑M2/38‑91 (MQ=255)

                                                     TTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGaa                                       <  1:304647‑M1/91‑1 (MQ=255)

                                                      TAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAAt                                      >  1:503258‑M1/1‑91 (MQ=255)

                                                       aaaatttctaatgcaaatctgctgtgaaattttaaCTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAAtt                                     >  1:781647‑M2/36‑91 (MQ=255)

                                                       aaaatttctaatgcaaatctgctgtgaaattttaaCTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAAtt                                     >  1:1457249‑M2/36‑91 (MQ=255)

                                                        AAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTc                                    <  1:3813371‑M1/91‑1 (MQ=255)

                                                        AAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTc                                    <  1:3320577‑M1/91‑1 (MQ=255)

                                                          ATTTCACAGCAGATTTGCATTAGAACTTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGt                                  >  1:3852881‑M1/1‑91 (MQ=255)

                                                           TTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTa                                 >  1:3281243‑M1/1‑91 (MQ=255)

                                                            ttctaatgcaaaactgctgtgaaattttaaCTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCatat                                >  1:3208290‑M2/31‑91 (MQ=255)

                                                             TCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTAtt                               <  1:3878192‑M1/91‑1 (MQ=255)

                                                               acaGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTga                             >  1:861533/1‑91 (MQ=255)

                                                                cagcagATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTgag                            >  1:2808287/1‑91 (MQ=255)

                                                                    agATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGagaaag                        <  1:915061/91‑1 (MQ=255)

                                                                    agATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGagaaag                        <  1:2528999/91‑1 (MQ=255)

                                                                     gATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGagaaaga                       <  1:1323949/91‑1 (MQ=255)

                                                                        ttGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACt                    <  1:4011143/91‑1 (MQ=255)

                                                                        ttGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACt                    <  1:4009424/91‑1 (MQ=255)

                                                                          gCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTaa                  >  1:3734939/1‑91 (MQ=255)

                                                                          gCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTaa                  >  1:3607653/1‑91 (MQ=255)

                                                                           cATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTaaa                 <  1:1286990/91‑1 (MQ=255)

                                                                             ttAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTaaaaa               >  1:914049/1‑91 (MQ=255)

                                                                              tAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTaaaaaa              <  1:1393578/91‑1 (MQ=255)

                                                                               aGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAAt             <  1:3353311/91‑1 (MQ=255)

                                                                                 aaattttaaCTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATaa           >  1:35727‑M2/10‑91 (MQ=255)

                                                                                 aaattttaaCTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATaa           >  1:35113‑M2/10‑91 (MQ=255)

                                                                                  aattttaaCTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAAc          <  1:3205204‑M2/83‑1 (MQ=255)

                                                                                  aattttaaCTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAAc          <  1:1433447‑M2/83‑1 (MQ=255)

                                                                                       taaCTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTAc     <  1:4132100‑M2/88‑1 (MQ=255)

                                                                                        aaCTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACt    >  1:2356423‑M2/3‑91 (MQ=255)

                                                                                         aCTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTa   >  1:3031935‑M2/2‑91 (MQ=255)

                                                                                         aCTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTa   >  1:1497515‑M2/2‑91 (MQ=255)

                                                                                          ctactaTTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTaa  >  1:3047691/1‑91 (MQ=255)

                                                                                          ctactaTTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTaa  >  1:390756/1‑91 (MQ=255)

TTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTAA  >  USA300TCH1516_ALE/2497273‑2497453

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.