BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2497326 =	131 (1.330)	7 (0.080)	5/140	NT	6.1%	coding (376/945 nt)	USA300HOU_RS12865	hypothetical protein
*	?	USA300TCH1516_ALE	2497363 =	102 (1.190)	7 (0.080)	5/140	NT	6.1%	coding (413/945 nt)	USA300HOU_RS12865	hypothetical protein

Only 100 of 173 total aligned reads displayed.

TTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAA  >  USA300TCH1516_ALE/2497236‑2497416

tagtaatgttattttttagttctttctcaatacgaattctacttttattaagtaatcgtaagttacgattataatggtcggcaatagtagt                                                                                            >  1:1497515‑M1/91‑91 (MQ=255)

 tAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAAttt                                                                                           <  1:1531958/91‑1 (MQ=255)

 tAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAAttt                                                                                           <  1:518686/91‑1 (MQ=255)

 agtaatgttattttttagttctttctcaatacgaattctacttttattaagtaatcgtaagttacgattataatggtcggcaatagtagtt                                                                                           >  1:2356423‑M1/90‑91 (MQ=255)

  gtaatgttattttttagttctttctcaatacgaattctacttttattaagtaatcgtaagttacgattataatggtcggcaatagtagTTa                                                                                          <  1:4132100‑M1/3‑1 (MQ=255)

    gCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTaaa                                                                                        >  1:1978024/1‑91 (MQ=255)

    gCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTaaa                                                                                        <  1:1228426/91‑1 (MQ=255)

       ttattattGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAAtt                                                                                     >  1:1647590/1‑91 (MQ=255)

       gttattttttagttctttctcaatacgaattctacttttattaagtaatcgtaagttacgattataatggtcggcaatagtagTTAAAAtt                                                                                     <  1:1433447‑M1/8‑1 (MQ=255)

       gttattttttagttctttctcaatacgaattctacttttattaagtaatcgtaagttacgattataatggtcggcaatagtagTTAAAAtt                                                                                     <  1:3205204‑M1/8‑1 (MQ=255)

        ttattttttagttctttctcaatacgaattctacttttattaagtaatcgtaagttacgattataatggtcggcaatagtagTTAAAAttt                                                                                    >  1:35113‑M1/83‑91 (MQ=255)

           tattGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTCTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTcac                                                                                 <  1:1167587/91‑1 (MQ=255)

             ttGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCAcag                                                                               <  1:1013167/91‑1 (MQ=255)

             ttGGCAACGGTATTATCGTAACAGTTTGTGACACTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCAcag                                                                               <  1:1678115/91‑1 (MQ=255)

              tGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCAcagc                                                                              <  1:3587969/91‑1 (MQ=255)

              tGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCAcagc                                                                              <  1:2158101/91‑1 (MQ=255)

               ggCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCAcagca                                                                             >  1:4115718/1‑91 (MQ=255)

               ggCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCAcagca                                                                             >  1:1035570/1‑91 (MQ=255)

                 cAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGa                                                                           <  1:2168098/91‑1 (MQ=255)

                   aCGGTATTATCGTAACAGTTTGTGACACTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGAtt                                                                         <  1:3851485/91‑1 (MQ=255)

                    cGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGAttt                                                                        <  1:1953629/91‑1 (MQ=255)

                     ggTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTg                                                                       >  1:3017820/1‑91 (MQ=255)

                     ggTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTg                                                                       <  1:1393564/91‑1 (MQ=255)

                     ggTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTg                                                                       <  1:2850901/91‑1 (MQ=255)

                     ggTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTg                                                                       >  1:91706/1‑91 (MQ=255)

                      gTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGc                                                                      <  1:2837806/91‑1 (MQ=255)

                        attatCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCAt                                                                    <  1:1500936/91‑1 (MQ=255)

                        attatCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCAt                                                                    >  1:1315434/1‑91 (MQ=255)

                         ttatCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCAtt                                                                   >  1:1307849/1‑91 (MQ=255)

                         ttatCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCAtt                                                                   >  1:3158891/1‑91 (MQ=255)

                         ttatCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCAtt                                                                   <  1:2188189/91‑1 (MQ=255)

                           atCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAg                                                                 <  1:1342266/91‑1 (MQ=255)

                           atCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAg                                                                 <  1:3074288/91‑1 (MQ=255)

                           atCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAg                                                                 >  1:49458/1‑91 (MQ=255)

                           atCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAg                                                                 >  1:50338/1‑91 (MQ=255)

                            tCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGa                                                                <  1:3710475/91‑1 (MQ=255)

                             cGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGaa                                                               >  1:47516/1‑91 (MQ=255)

                              gTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGaaa                                                              <  1:4028036/91‑1 (MQ=255)

                              gTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGaaa                                                              <  1:4028145/91‑1 (MQ=255)

                               tAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAAt                                                             >  1:3924675/1‑91 (MQ=255)

                               tAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAAt                                                             >  1:3924475/1‑91 (MQ=255)

                                  aattctacttttattaagtaatcgtaagttacgattataatggtcggcaatagtagTTAAAATTTCACAGCAGATTTGCATTAGAAAtttt                                                          >  1:781647‑M1/57‑91 (MQ=255)

                                    ttctacttttattaagtaatcgtaagttacgattataatggtcggcaatagtagTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTaa                                                        >  1:2586052‑M1/55‑91 (MQ=255)

                                    gTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTaa                                                        <  1:2525590/91‑1 (MQ=255)

                                    gTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTaa                                                        >  1:3963977/1‑91 (MQ=255)

                                    gTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTaa                                                        <  1:10081/91‑1 (MQ=255)

                                     tttGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAac                                                       >  1:3337557/1‑91 (MQ=255)

                                       tgtgACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAacta                                                     >  1:3536674/1‑91 (MQ=255)

                                        gtgACGCTGAAAATGAATTTTTAGAAAATTTATCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAactac                                                    >  1:958927/1‑91 (MQ=255)

                                        gtgACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAactac                                                    >  1:496283/1‑91 (MQ=255)

                                        gtgACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAactac                                                    >  1:596417/1‑91 (MQ=255)

                                        gtgACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAactac                                                    >  1:596404/1‑91 (MQ=255)

                                        acttttattaagtaatcgtaagttacgattataatggtcggcaatagtagTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAactac                                                    >  1:42959‑M1/51‑91 (MQ=255)

                                         tgACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAactact                                                   >  1:1520562/1‑91 (MQ=255)

                                          gACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAActacta                                                  >  1:2311237/1‑91 (MQ=255)

                                           aCGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTAt                                                 <  1:2743421/91‑1 (MQ=255)

                                            cGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTAtt                                                >  1:707432/1‑91 (MQ=255)

                                             gCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTg                                               >  1:200831/1‑91 (MQ=255)

                                              cTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGc                                              <  1:1607587/91‑1 (MQ=255)

                                                 aaaaTGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGa                                           >  1:2566180/1‑91 (MQ=255)

                                                 aaaaTGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGa                                           >  1:1061339/1‑91 (MQ=255)

                                                 aaaaTGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGa                                           >  1:1060934/1‑91 (MQ=255)

                                                   aaTGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGAcc                                         <  1:1562122/91‑1 (MQ=255)

                                                    aTGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCa                                        >  1:1408238/1‑91 (MQ=255)

                                                    aTGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCa                                        <  1:710805/91‑1 (MQ=255)

                                                     tGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCAt                                       >  1:338163/1‑91 (MQ=255)

                                                       aaTTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATta                                     >  1:465754/1‑91 (MQ=255)

                                                       aaTTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATta                                     >  1:1741797/1‑91 (MQ=255)

                                                       aaTTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATta                                     <  1:1888873/91‑1 (MQ=255)

                                                        aTTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATtat                                    <  1:927138/91‑1 (MQ=255)

                                                        aTTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATtat                                    <  1:1452285/91‑1 (MQ=255)

                                                           tttAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAAt                                 <  1:966296/91‑1 (MQ=255)

                                                           tttAGAAAATTTACCTAAGCGTGATATTAATGTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAAt                                 <  1:1974652/91‑1 (MQ=255)

                                                            ttAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATc                                <  1:656018/91‑1 (MQ=255)

                                                            ttAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATc                                <  1:2962673/91‑1 (MQ=255)

                                                            ttAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATc                                <  1:2962616/91‑1 (MQ=255)

                                                               gAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTa                             >  1:2004329/1‑91 (MQ=255)

                                                                   aTTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACtt                         <  1:2410650/91‑1 (MQ=255)

                                                                   aTTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACtt                         <  1:61722/91‑1 (MQ=255)

                                                                   aTTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACtt                         >  1:28497/1‑91 (MQ=255)

                                                                    tttACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTa                        <  1:3471749/91‑1 (MQ=255)

                                                                    tttACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTa                        <  1:1568398/91‑1 (MQ=255)

                                                                    tttACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTa                        <  1:3046214/91‑1 (MQ=255)

                                                                     ttACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTAc                       <  1:2893966/91‑1 (MQ=255)

                                                                     ttACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTAc                       >  1:1900074/1‑91 (MQ=255)

                                                                        ccTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAAGTTACGAt                    <  1:1882074/91‑1 (MQ=255)

                                                                         cTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGAtt                   >  1:2452953/1‑91 (MQ=255)

                                                                          tAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAAGTTACGATTa                  <  1:1168151/91‑1 (MQ=255)

                                                                          tAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATATTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTa                  >  1:2396438/1‑91 (MQ=255)

                                                                                tGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTtaat            <  1:2969244/91‑1 (MQ=255)

                                                                                     ttAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAg       <  1:3833530/91‑1 (MQ=255)

                                                                                      tAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGt      <  1:1110081/91‑1 (MQ=255)

                                                                                       aaTTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTa     <  1:293429/91‑1 (MQ=255)

                                                                                       aaTTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTa     >  1:1272855/1‑91 (MQ=255)

                                                                                       aaTTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTAGTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTa     >  1:3299865/1‑91 (MQ=255)

                                                                                        aTTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAg    <  1:1071583/91‑1 (MQ=255)

                                                                                         tttAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGa   <  1:2257651/91‑1 (MQ=255)

                                                                                         tttAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGa   >  1:84918/1‑91 (MQ=255)

                                                                                         tttAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGa   >  1:1797392/1‑91 (MQ=255)

                                                                                          TTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGaa  <  1:304647‑M1/91‑1 (MQ=255)

TTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAA  >  USA300TCH1516_ALE/2497236‑2497416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.