| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2497906 = | 132 (1.340) | 6 (0.070) | 5/138 | NT | 6.7% | intergenic (+11/+75) | USA300HOU_RS12865/treP_2 | hypothetical protein/PTS system trehalose‑specific EIIBC component |
| ? | USA300TCH1516_ALE | 2497975 = | 54 (0.640) | intergenic (+80/+6) | USA300HOU_RS12865/treP_2 | hypothetical protein/PTS system trehalose‑specific EIIBC component | |||||
AAGCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2498006‑2497906‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtcatacctCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGATATTGTCATAC > USA300TCH1516_ALE/2497975‑2498063 AAGCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGC < 1:2244957/91‑1 AGCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCT > 1:624133/1‑91 AGCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCT > 1:3013588/1‑91 GCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTG > 1:326266/1‑91 GCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTG > 1:3476947/1‑91 GCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTG > 1:2093709/1‑91 GCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTG > 1:2093618/1‑91 GCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTG > 1:2093196/1‑91 GCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTG > 1:2018930/1‑91 GCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTG > 1:4105215/1‑91 GCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTG > 1:4105216/1‑91 GCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTG > 1:173292/1‑91 CAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGT < 1:1846593/91‑1 CAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGT < 1:237663/91‑1 AATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCA < 1:3166520/91‑1 TAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATA > 1:551998/1‑91 TAAACAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATA > 1:3279293/1‑91 AAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATAC < 1:356738/91‑1 AAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATAC < 1:356402/91‑1 AAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATAC > 1:3289088/1‑91 AGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCT > 1:2101389/1‑91 AAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTCTTTTTTTATTCTAC > 1:1524416/1‑91 AAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTCTTTTTTTATTCTACAACT > 1:1852115/1‑91 GAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTCTTTTTTTATTCTACAACTTC > 1:2423611/1‑91 GAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTCTTTTTTTATTCTACAACTTC > 1:2423447/1‑91 GTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTCTTTTTTTATTCTACAACTTCTTT > 1:1965371/1‑91 CAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGC > 1:1049047/1‑91 CTGTCATTCCTCGTTTTTTATTCTACAACTTCTTTATTTGCTATTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGATA < 1:4111846/91‑1 CTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGATA > 1:1962499/1‑91 CTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGATA > 1:1962356/1‑91 CTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGATA > 1:1303308/1‑91 CTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATAAATGATA > 1:3059308/1‑91 CTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATAAATGATA > 1:2575530/1‑91 ACCTTTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGATATTGTCAT < 1:3455039/91‑1 CTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGATATTGTCATAC > 1:324155/1‑91 AAGCAAATAAAGAAGTTGTAGAATAAAAAAAGAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2498006‑2497906‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtcatacctCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGATATTGTCATAC > USA300TCH1516_ALE/2497975‑2498063 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |