BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2497906 =	132 (1.340)	6 (0.070)	5/138	NT	6.7%	intergenic (+11/+75)	USA300HOU_RS12865/treP_2	hypothetical protein/PTS system trehalose‑specific EIIBC component
*	?	USA300TCH1516_ALE	2497975 =	54 (0.640)	6 (0.070)	5/138	NT	6.7%	intergenic (+80/+6)	USA300HOU_RS12865/treP_2	hypothetical protein/PTS system trehalose‑specific EIIBC component

Only 100 of 154 total aligned reads displayed.

CTTGGATTATTGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCT  >  USA300TCH1516_ALE/2497816‑2497996

cTTGGATTATTGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTaaaa                                                                                            >  1:1982229/1‑91 (MQ=255)

cTTGGATTATTGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTaaaa                                                                                            <  1:2031466/91‑1 (MQ=255)

 gtatgacaatatcattcatcattgctataacagttactttaattttatctaaaagaaaagcaaataaagaagttgtagaataaaaaaagag                                                                                           >  1:324155‑M1/90‑91 (MQ=255)

  tGGATTATTGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAgg                                                                                          >  1:2626128/1‑91 (MQ=255)

   ggATTATTGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGt                                                                                         <  1:1888891/91‑1 (MQ=255)

     attattGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTAt                                                                                       >  1:3947314/1‑91 (MQ=255)

     attattGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTAt                                                                                       >  1:3285555/1‑91 (MQ=255)

       tattGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAATAGAAATTATAACTAAATTAAAAGGTATGa                                                                                     >  1:3321971/1‑91 (MQ=255)

       tattGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGa                                                                                     >  1:871810/1‑91 (MQ=255)

       tattGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGa                                                                                     <  1:1587804/91‑1 (MQ=255)

        attGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGAc                                                                                    <  1:1039130/91‑1 (MQ=255)

        attGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGAc                                                                                    >  1:274798/1‑91 (MQ=255)

        attGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGAc                                                                                    >  1:3017394/1‑91 (MQ=255)

        attGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGAc                                                                                    >  1:3883764/1‑91 (MQ=255)

         ttGTGGTAGATATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGTTATGACa                                                                                   >  1:2084417/1‑91 (MQ=255)

          tgtgGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAg                                                                                  >  1:1019523/1‑91 (MQ=255)

          tgtgGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAg                                                                                  <  1:1162540/91‑1 (MQ=255)

          tatcatttatcattgctataacagttactttaattttatctaaaagaaaagcaaataaagaagttgtagaataaaaaaagAGGTATGACAg                                                                                  >  1:3059308‑M1/81‑91 (MQ=255)

          tatcattcatcattgctataacagttactttaattttatctaaaagaaaagcaaataaagaagttgtagaataaaaaaagAGGTATGACAg                                                                                  >  1:1962499‑M1/81‑91 (MQ=255)

          tatcattcatcattgctataacagttactttaattttatctaaaagaaaagcaaataaagaagttgtagaataaaaaaagAGGTATGACAg                                                                                  >  1:1303308‑M1/81‑91 (MQ=255)

             ggtaggtaTTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCtt                                                                               >  1:2679706/1‑91 (MQ=255)

             ggtaggtaTTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCtt                                                                               >  1:1572155/1‑91 (MQ=255)

             ggtaggtaTTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCtt                                                                               >  1:3691377/1‑91 (MQ=255)

              gtaggtaTTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTa                                                                              >  1:2737729/1‑91 (MQ=255)

              gtaggtaTTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTa                                                                              <  1:1953955/91‑1 (MQ=255)

              gtaggtaTTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTa                                                                              <  1:1955314/91‑1 (MQ=255)

              gtaggtaTTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTa                                                                              <  1:1955463/91‑1 (MQ=255)

                     tttCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTc                                                                       >  1:864181/1‑91 (MQ=255)

                     tttCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTc                                                                       >  1:1192887/1‑91 (MQ=255)

                     tttCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTc                                                                       >  1:2005111/1‑91 (MQ=255)

                       tCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCAt                                                                     >  1:2566401/1‑91 (MQ=255)

                       tCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCAt                                                                     <  1:2510982/91‑1 (MQ=255)

                       tCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCAt                                                                     >  1:920277/1‑91 (MQ=255)

                         aTTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATcc                                                                   >  1:2813852/1‑91 (MQ=255)

                         aTTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATcc                                                                   <  1:3471756/91‑1 (MQ=255)

                         aTTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATcc                                                                   <  1:3471792/91‑1 (MQ=255)

                         aTTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATcc                                                                   >  1:3770052/1‑91 (MQ=255)

                          ttAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCt                                                                  >  1:2000652/1‑91 (MQ=255)

                          ttAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCt                                                                  <  1:2117444/91‑1 (MQ=255)

                           tAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTa                                                                 >  1:3943263/1‑91 (MQ=255)

                            aaTTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCGTCCTAt                                                                <  1:3232179/91‑1 (MQ=255)

                            aaTTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTAt                                                                <  1:1489156/91‑1 (MQ=255)

                             aTTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTAtt                                                               <  1:150004/91‑1 (MQ=255)

                              ttCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTg                                                              <  1:2822367/91‑1 (MQ=255)

                              ttCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTg                                                              <  1:2822607/91‑1 (MQ=255)

                              ttCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTg                                                              <  1:1551923/91‑1 (MQ=255)

                                  tGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCAtt                                                          <  1:3784575/91‑1 (MQ=255)

                                  tGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCAtt                                                          >  1:4146106/1‑91 (MQ=255)

                                  tGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCAtt                                                          <  1:3341712/91‑1 (MQ=255)

                                  tGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCAtt                                                          <  1:3341726/91‑1 (MQ=255)

                                   gTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCaaat                                                         <  1:2354184/91‑4 (MQ=255)

                                   gTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCaaat                                                         <  1:606333/91‑4 (MQ=255)

                                   gTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCAttt                                                         >  1:2094134/1‑91 (MQ=255)

                                    tCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTg                                                        >  1:2555784/1‑91 (MQ=255)

                                    tCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTg                                                        >  1:1818456/1‑91 (MQ=255)

                                      gTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCa                                                      >  1:2117956/1‑91 (MQ=255)

                                          ttGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGa                                                  <  1:3826524/91‑1 (MQ=255)

                                           tGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGAc                                                 <  1:477367/91‑1 (MQ=255)

                                            gTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAACTTAAAGTTTCATCCTATTGCATTTGCAATGACt                                                >  1:1998705/1‑91 (MQ=255)

                                             ttAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTg                                               >  1:3008985/1‑91 (MQ=255)

                                             ttAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTg                                               <  1:1953589/91‑1 (MQ=255)

                                              tAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGa                                              <  1:4050900/91‑1 (MQ=255)

                                               aGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGAt                                             >  1:3563659/1‑91 (MQ=255)

                                               aGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGAt                                             >  1:2895001/1‑91 (MQ=255)

                                                gTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATa                                            >  1:1305337/1‑91 (MQ=255)

                                                  aTTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACt                                          <  1:1415760/91‑1 (MQ=255)

                                                     ttCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTg                                       >  1:2702164/1‑91 (MQ=255)

                                                       cTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGAt                                     >  1:2874890/1‑91 (MQ=255)

                                                       cTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGAt                                     >  1:1840700/1‑91 (MQ=255)

                                                        ttATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGAtt                                    >  1:1865418/1‑91 (MQ=255)

                                                         tATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTa                                   <  1:1690903/91‑1 (MQ=255)

                                                            gcaaataaagaagttgtagaataaaaaaagAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTg                                >  1:1049047‑M1/31‑91 (MQ=255)

                                                             gCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGt                               <  1:1519200/91‑1 (MQ=255)

                                                             gCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGt                               >  1:2356497/1‑91 (MQ=255)

                                                             gCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGt                               <  1:2359192/91‑1 (MQ=255)

                                                             gCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGt                               >  1:2664436/1‑91 (MQ=255)

                                                               gTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCa                             <  1:1538016/91‑1 (MQ=255)

                                                               gTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCa                             >  1:1654996/1‑91 (MQ=255)

                                                               gTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCa                             <  1:3357978/91‑1 (MQ=255)

                                                               gTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCa                             <  1:1537998/91‑1 (MQ=255)

                                                                tAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCAt                            >  1:729649/1‑91 (MQ=255)

                                                                 aaaCAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATa                           <  1:1790086/91‑1 (MQ=255)

                                                                 aaaCAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATa                           >  1:1236817/1‑91 (MQ=255)

                                                                  aaagaagttgtagaataaaaaaagAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATAc                          >  1:1965371‑M1/25‑91 (MQ=255)

                                                                   aCAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATAcc                         <  1:3435872/91‑1 (MQ=255)

                                                                   aCAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATAcc                         <  1:4020921/91‑1 (MQ=255)

                                                                     gaagttgtagaataaaaaaagAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACctc                       >  1:2423447‑M1/22‑91 (MQ=255)

                                                                     gaagttgtagaataaaaaaagAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACctc                       >  1:2423611‑M1/22‑91 (MQ=255)

                                                                     aGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATAccgc                       <  1:2538770/91‑3 (MQ=255)

                                                                     aGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACctc                       <  1:2538698/91‑1 (MQ=255)

                                                                       agttgtagaataaaaaaagAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCtt                     >  1:1852115‑M1/20‑91 (MQ=255)

                                                                       aaaTTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCtt                     <  1:2373942/91‑1 (MQ=255)

                                                                          ttATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCttttt                  <  1:1328881/91‑1 (MQ=255)

                                                                           tataACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCtttttt                 >  1:2594319/1‑91 (MQ=255)

                                                                            ataACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCttttttt                >  1:3581646/1‑91 (MQ=255)

                                                                            ataACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCttttttt                <  1:1141360/91‑1 (MQ=255)

                                                                              aaCTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTAt              >  1:1232311/1‑91 (MQ=255)

                                                                               aCTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTAtt             >  1:2610529/1‑91 (MQ=255)

                                                                                cTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTc            <  1:3006889/91‑1 (MQ=255)

                                                                                         aaGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAGcttc   <  1:3275038/91‑1 (MQ=255)

CTTGGATTATTGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCT  >  USA300TCH1516_ALE/2497816‑2497996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.