BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2497906 =	132 (1.340)	6 (0.070)	5/138	NT	6.7%	intergenic (+11/+75)	USA300HOU_RS12865/treP_2	hypothetical protein/PTS system trehalose‑specific EIIBC component
*	?	USA300TCH1516_ALE	2497975 =	54 (0.640)	6 (0.070)	5/138	NT	6.7%	intergenic (+80/+6)	USA300HOU_RS12865/treP_2	hypothetical protein/PTS system trehalose‑specific EIIBC component

Only 100 of 107 total aligned reads displayed.

AGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGATATTGTCATAC  >  USA300TCH1516_ALE/2497885‑2498063

gaagttgtagaataaaaaaagAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACctc                                                                                          >  1:2423611‑M1/22‑91 (MQ=255)

gaagttgtagaataaaaaaagAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACctc                                                                                          >  1:2423447‑M1/22‑91 (MQ=255)

aGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACctc                                                                                          <  1:2538625/91‑1 (MQ=255)

 gAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACctct                                                                                         <  1:2618537/91‑1 (MQ=255)

  agttgtagaataaaaaaagAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCtt                                                                                        >  1:1852115‑M1/20‑91 (MQ=255)

  aaaTTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCtt                                                                                        <  1:2545894/91‑1 (MQ=255)

  aaaTTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCtt                                                                                        <  1:2373942/91‑1 (MQ=255)

     ttATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCttttt                                                                                     >  1:1046710/1‑91 (MQ=255)

     ttATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCttttt                                                                                     <  1:1328881/91‑1 (MQ=255)

      tataACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCtttttt                                                                                    >  1:2594319/1‑91 (MQ=255)

      gtagaataaaaaaagAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCtttttt                                                                                    >  1:1524416‑M1/16‑91 (MQ=255)

       ataACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCttttttt                                                                                   >  1:3581646/1‑91 (MQ=255)

       ataACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCttttttt                                                                                   <  1:1141406/91‑1 (MQ=255)

       ataACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCttttttt                                                                                   <  1:1141360/91‑1 (MQ=255)

         aaCTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTAt                                                                                 >  1:1232311/1‑91 (MQ=255)

         aaCTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTAATTACTGTCATACCTCTTTTTTTAt                                                                                 >  1:3856686/1‑91 (MQ=255)

          aCTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTAtt                                                                                >  1:2610529/1‑91 (MQ=255)

           cTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTc                                                                               <  1:3006889/91‑1 (MQ=255)

              aaaaaagaggtatgacagtaatcaaagtatcagtcattgcaaatgcaataggatgaaactttaagctgtcatacctCTTTTTTTATTCTAc                                                                            >  1:1524416‑M2/77‑91 (MQ=255)

                  aagaggtatgacagtaatcaaagtatcagtcattgcaaatgcaataggatgaaactttaagctgtcatacctCTTTTTTTATTCTACAAct                                                                        >  1:1852115‑M2/73‑91 (MQ=255)

                   aaaGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAActt                                                                       >  1:3961292/1‑91 (MQ=255)

                    gaggtatgacagtaatcaaagtatcagtcattgcaaatgcaataggatgaaactttaagctgtcatacctCTTTTTTTATTCTACAActtc                                                                      >  1:2423447‑M2/71‑91 (MQ=255)

                    gaggtatgacagtaatcaaagtatcagtcattgcaaatgcaataggatgaaactttaagctgtcatacctCTTTTTTTATTCTACAActtc                                                                      >  1:2423611‑M2/71‑91 (MQ=255)

                    aaGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAGcttc                                                                      <  1:3275038/91‑1 (MQ=255)

                       gtatgacagtaatcaaagtatcagtcattgcaaatgcaataggatgaaactttaagctgtcatacctCTTTTTTTATTCTACAACTTCttt                                                                   >  1:1965371‑M2/68‑91 (MQ=255)

                       GTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCttt                                                                   >  1:3289088‑M1/1‑91 (MQ=255)

                       GTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCttt                                                                   <  1:356402‑M1/91‑1 (MQ=255)

                       GTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCttt                                                                   <  1:356738‑M1/91‑1 (MQ=255)

                        TATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTGTTTa                                                                  >  1:3279293‑M1/1‑91 (MQ=255)

                        TATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTa                                                                  >  1:551998‑M1/1‑91 (MQ=255)

                          TGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTAtt                                                                <  1:3166520‑M1/91‑1 (MQ=255)

                            ACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTg                                                              <  1:1846593‑M1/91‑1 (MQ=255)

                            ACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTg                                                              <  1:237663‑M1/91‑1 (MQ=255)

                             cagtaatcaaagtatcagtcattgcaaatgcaataggatgaaactttaagctgtcatacctCTTTTTTTATTCTACAACTTCTTTATTTGc                                                             >  1:1049047‑M2/62‑91 (MQ=255)

                             CAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGc                                                             >  1:2093618‑M1/1‑91 (MQ=255)

                             CAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGc                                                             >  1:326266‑M1/1‑91 (MQ=255)

                             CAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGc                                                             >  1:2093709‑M1/1‑91 (MQ=255)

                             CAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGc                                                             >  1:2093196‑M1/1‑91 (MQ=255)

                             CAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGc                                                             >  1:2018930‑M1/1‑91 (MQ=255)

                             CAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGc                                                             >  1:4105216‑M1/1‑91 (MQ=255)

                              AGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCt                                                            >  1:624133‑M1/1‑91 (MQ=255)

                              AGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCt                                                            >  1:3013588‑M1/1‑91 (MQ=255)

                               GCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCtt                                                           <  1:2244957‑M1/91‑1 (MQ=255)

                                cTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGcttt                                                          <  1:886753/91‑1 (MQ=255)

                                 ttAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGctttt                                                         <  1:2787955/91‑1 (MQ=255)

                                  tAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGcttttc                                                        >  1:738448/1‑91 (MQ=255)

                                   aaaGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGcttttct                                                       >  1:1787804/1‑91 (MQ=255)

                                     aGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGcttttcttt                                                     >  1:1559015/1‑91 (MQ=255)

                                     aGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGcttttcttt                                                     <  1:3580899/91‑1 (MQ=255)

                                        ttCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAg                                                  <  1:925784/91‑1 (MQ=255)

                                         tCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGa                                                 <  1:2950208/91‑1 (MQ=255)

                                         tCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGa                                                 <  1:3090388/91‑1 (MQ=255)

                                          cATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGAt                                                <  1:740554/91‑1 (MQ=255)

                                          cATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGAt                                                >  1:365418/1‑91 (MQ=255)

                                          cATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGAt                                                <  1:3186733/91‑1 (MQ=255)

                                            tCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATaa                                              >  1:594724/1‑91 (MQ=255)

                                                aTTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAAtt                                          >  1:2558685/1‑91 (MQ=255)

                                                aTTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAAtt                                          >  1:2007055/1‑91 (MQ=255)

                                                aTTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAAtt                                          >  1:3241628/1‑91 (MQ=255)

                                                aTTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAAtt                                          >  1:3241556/1‑91 (MQ=255)

                                                  tGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTaa                                        <  1:1154376/91‑1 (MQ=255)

                                                   gCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTaaa                                       <  1:3437749/91‑1 (MQ=255)

                                                       atGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTaa                                   >  1:3732259/2‑91 (MQ=255)

                                                       atGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTaa                                   >  1:3732106/2‑91 (MQ=255)

                                                        tGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAAc                                  >  1:1707805/1‑91 (MQ=255)

                                                        tGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAAc                                  <  1:2244176/91‑1 (MQ=255)

                                                        tGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAAc                                  >  1:500565/1‑91 (MQ=255)

                                                        tGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAAc                                  <  1:1023084/91‑1 (MQ=255)

                                                         gCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACt                                 <  1:3104936/91‑1 (MQ=255)

                                                         gCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTCAGATAAAATTAAAGTAACt                                 >  1:2351669/1‑91 (MQ=255)

                                                          cAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTg                                >  1:1838331/1‑91 (MQ=255)

                                                           aaTGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGt                               >  1:437387/1‑91 (MQ=255)

                                                           aaTGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGt                               >  1:436768/1‑91 (MQ=255)

                                                           aaTGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGt                               <  1:315603/91‑1 (MQ=255)

                                                            aTGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGtt                              >  1:3891437/1‑91 (MQ=255)

                                                            aTGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGtt                              <  1:527094/91‑1 (MQ=255)

                                                              gACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTtat                            <  1:4034443/91‑1 (MQ=255)

                                                              gACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTtat                            <  1:4034384/91‑1 (MQ=255)

                                                               aCTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTtata                           >  1:460623/1‑91 (MQ=255)

                                                                 tGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGc                         <  1:2043081/91‑1 (MQ=255)

                                                                   aTACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCaa                       >  1:3725188/1‑91 (MQ=255)

                                                                      cTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAatga                    <  1:2169829/91‑1 (MQ=255)

                                                                      cTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTACTTTTAGATAAAATTAAAGTAACTGTTATAGCAatga                    <  1:3494111/91‑1 (MQ=255)

                                                                        ttGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAatgatg                  >  1:1560494/1‑91 (MQ=255)

                                                                          gATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGatgaa                <  1:2987704/91‑1 (MQ=255)

                                                                          gATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGatgaa                <  1:2704022/91‑1 (MQ=255)

                                                                          gATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGatgaa                <  1:1533397/91‑1 (MQ=255)

                                                                          gATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGatgaa                <  1:2918961/91‑1 (MQ=255)

                                                                          gATTACTGTCATACCACTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGatgaa                <  1:2963375/91‑1 (MQ=255)

                                                                           aTTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGatgaat               >  1:2306113/1‑91 (MQ=255)

                                                                            ttACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGatgaatg              <  1:2161905/91‑1 (MQ=255)

                                                                            ttACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGatgaatg              <  1:2444660/91‑1 (MQ=255)

                                                                              aCTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGat            <  1:3045896/91‑1 (MQ=255)

                                                                               ctgtcattcctCGTTTTTTATTCTACAACTTCTTTATTTGCTATTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGata           <  1:4111846‑M2/80‑1 (MQ=255)

                                                                               ctgtcatacctCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCaatgataaatgata           >  1:2575530‑M2/12‑91 (MQ=255)

                                                                               ctgtcatacctCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGata           >  1:1962499‑M2/12‑91 (MQ=255)

                                                                               ctgtcatacctCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGata           >  1:1962356‑M2/12‑91 (MQ=255)

                                                                               ctgtcatacctCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGata           >  1:1303308‑M2/12‑91 (MQ=255)

                                                                                      acctTTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGATATTGTCAt    <  1:3455039‑M2/87‑1 (MQ=255)

                                                                                        ctCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGATATTGTCATAc  >  1:324155‑M2/3‑91 (MQ=255)

AGAAATTATAACTAAATTAAAAGGTATGACAGCTTAAAGTTTCATCCTATTGCATTTGCAATGACTGATACTTTGATTACTGTCATACCTCTTTTTTTATTCTACAACTTCTTTATTTGCTTTTCTTTTAGATAAAATTAAAGTAACTGTTATAGCAATGATGAATGATATTGTCATAC  >  USA300TCH1516_ALE/2497885‑2498063

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.