| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2505518 | 90 (0.920) | 7 (0.080) | 5/144 | NT | 7.8% | coding (860/1278 nt) | gltT | Proton/sodium‑glutamate symport protein |
| ? | USA300TCH1516_ALE | = 2505555 | 84 (0.950) | coding (823/1278 nt) | gltT | Proton/sodium‑glutamate symport protein | |||||
AGATTGATAAAGTGCTGATCCATCTAAGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2505421‑2505518‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattttctACATCAAGTTCGGAAGCTGTACTTCCTGTAATGATGAAGAAAATGGAAAACTTCGGTTCTCCAAAAGAAATTACTTCTTTTGTTATACC < USA300TCH1516_ALE/2505555‑2505467 AGATTGATAAAGTGCTGATCCATCTAAGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCC < 1:4000646/91‑1 ATTGATAAAGTGCTGATCCATCTAAGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCAT < 1:3624300/91‑1 TTGATAAAGTGCTGATCCATCTAAGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATT < 1:1672669/91‑1 TTGATAAAGTGCTGATCCATCTAAGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATT > 1:3803612/1‑91 TTGATAAAGTGCTGATCCATCTAAGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATT < 1:2151466/91‑1 TTGATAAAGTGCTGATCCATCTAAGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATT > 1:3803303/1‑91 GATAAAGTGCTGATCCATCTAAGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTT < 1:789336/91‑1 GATAAAGTGCTGATCCATCTAAGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTT > 1:1619503/1‑91 GATAAAGTGCTGATCCATCTAAGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTT > 1:551832/1‑91 TTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTACATCAAGTTCGGAAGCTGTACTTCCTGTAATGATGA < 1:3346168/91‑1 GGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTACATCAAGTTCGGAAGCTGTACTTCCTGTAATGATGAAG < 1:2970690/91‑1 GGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTACATCAAGTTCGGAAGCTGTACTTCCTGTAATGATGAAG < 1:3869185/91‑1 ATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTACATCAAGTTCGGAAGCTGTACTTCCTGTAATGATGAAGAAA < 1:149733/91‑1 AACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTACATCAAGTTCGGAAGCTGTACTTCCTGTAATGATGAAGAAAAT < 1:2359675/91‑1 AACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTACATCAAGTTCGGAAGCTGTACTTCCTGTAATGATGAAGAAAAT < 1:2358886/91‑1 CAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTACATCAAGTTCGGAAGCTGTACTTCCTGTAATGATGAAGAAAATGG < 1:52584/91‑1 CATTTTCTACATCAAGTTCGGAAGCTGTACTTCCTGTAATGATGAAGAAAATGGAAAACTTCGGTTCTCCAAAAGAAATTACTTCTTTTGT < 1:1283230/91‑1 TTTTCTACATCAAGTTCGGAAGCTGTACTTCCTGTAATGATGAAGAAAATGGAAAACTTCGGTTCTCCAAAAGAAATTACTTCTTTTGTTA < 1:1793117/91‑1 TTTCTACATCAAGTTCGGAAGCTGTACTTCCTGTAATGATGAAGAAAATGGAAAACTTCGGTTCTCCAAAAGAAATTACTTCTTTTGTTAT < 1:2283879/91‑1 TTTCTACATCAAGTTCGGAAGCTGTACTTCCTGTAATGATGAAGAAAATGGAAAACTTCGGTTCTCCAAAAGAAATTACTTCTTTTGTTAT < 1:686777/91‑1 TTCTACATCAAGTTCGGAAGCTGTACTTCCTGTAATGATGAAGAAAATGGAAAACTTCGGTTCTCCAAAAGAAGTTACTTCTTTTGTTATA < 1:3889829/91‑1 TTCTACATCAAGTTCGGAAGCTGTACTTCCTGTAATGATGAAGAAAATGGAAAACTTCGGTTCTCCAAAAGAAATTACTTCTTTTGTTATA < 1:3889849/91‑1 TTCTACATCAAGTTCGGAAGCTGTACTTCCTGTAATGATGAAGAAAATGGAAAACTTCGGTTCTCCAAAAGAAATTACTTCTTTTGTTATA < 1:1961626/91‑1 CTACATCAAGTTCGGAAGCTGTACTTCCTGTAATGATGAAGAAAATGGAAAACTTCGGTTCTCCAAAAGAAATTACTTCTTTTGTTATACC > 1:2142909/1‑91 AGATTGATAAAGTGCTGATCCATCTAAGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2505421‑2505518‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattttctACATCAAGTTCGGAAGCTGTACTTCCTGTAATGATGAAGAAAATGGAAAACTTCGGTTCTCCAAAAGAAATTACTTCTTTTGTTATACC < USA300TCH1516_ALE/2505555‑2505467 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |