BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2505518	90 (0.920)	7 (0.080)	5/144	NT	7.8%	coding (860/1278 nt)	gltT	Proton/sodium‑glutamate symport protein
*	?	USA300TCH1516_ALE	= 2505555	84 (0.950)	7 (0.080)	5/144	NT	7.8%	coding (823/1278 nt)	gltT	Proton/sodium‑glutamate symport protein

Only 100 of 112 total aligned reads displayed.

TTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACCACACATCCATGCAACTAGTCCTAGTATAGC  >  USA300TCH1516_ALE/2505465‑2505645

ttGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGt                                                                                            <  1:8927/91‑1 (MQ=255)

ttGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGt                                                                                            >  1:1275425/1‑91 (MQ=255)

  ggTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTag                                                                                          >  1:2142909‑M2/1‑89 (MQ=255)

    tataACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaa                                                                                        <  1:3889849‑M2/91‑5 (MQ=255)

    tataACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaa                                                                                        <  1:1961626‑M2/91‑5 (MQ=255)

    tataACAAAAGAAGTAACTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaa                                                                                        <  1:3889829‑M2/91‑5 (MQ=255)

     ataACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaaa                                                                                       <  1:686777‑M2/91‑6 (MQ=255)

     ataACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaaa                                                                                       <  1:2283879‑M2/91‑6 (MQ=255)

      taACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaaaa                                                                                      <  1:1793117‑M2/91‑7 (MQ=255)

        aCAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaaaatg                                                                                    <  1:1283230‑M2/91‑9 (MQ=255)

            aagaagTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTaa                                                                                >  1:3108377/1‑91 (MQ=255)

            aagaagTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTaa                                                                                >  1:3108495/1‑91 (MQ=255)

             agaagTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTaaa                                                                               >  1:2999371/1‑91 (MQ=255)

              gaagTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTaaaa                                                                              >  1:1370556/1‑91 (MQ=255)

               aagTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAg                                                                             >  1:1931369/1‑91 (MQ=255)

                agTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGc                                                                            >  1:4100948/1‑91 (MQ=255)

                 gTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGATTCCGAACTTGATGTAGAAAATGCTAAAAGCa                                                                           >  1:3551963/1‑91 (MQ=255)

                 gTAATTTCTTTTGGAGAACCGAAGTTTTCCATTCTCTCCATCATTACAGGAAGTACAGCCTCCGAACTTGATGTAGAAAATGCTAAAAGCa                                                                           >  1:3314199/1‑91 (MQ=255)

                  ttacttCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCaa                                                                          >  1:2524963/5‑91 (MQ=255)

                  ttacttCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCaa                                                                          >  1:3191810/5‑91 (MQ=255)

                  tAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCaa                                                                          <  1:3247554/91‑1 (MQ=255)

                  tAATTTCTTTTGGAGAACCGAAGTTATCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCaa                                                                          <  1:3862444/91‑1 (MQ=255)

                   aaTTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAAt                                                                         <  1:3950330/91‑1 (MQ=255)

                   aaTTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAAt                                                                         >  1:3431314/1‑91 (MQ=255)

                   aaTTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAAt                                                                         >  1:956297/1‑91 (MQ=255)

                   aaTTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAAt                                                                         <  1:470118/91‑1 (MQ=255)

                   aaTTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAAt                                                                         >  1:62935/1‑91 (MQ=255)

                    aTTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAAtt                                                                        <  1:2091968/91‑1 (MQ=255)

                    aTTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAAtt                                                                        <  1:2906766/91‑1 (MQ=255)

                    aTTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAAtt                                                                        >  1:3020345/1‑91 (MQ=255)

                       tCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCGATTCAc                                                                     <  1:3224167/91‑1 (MQ=255)

                       tCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCAc                                                                     <  1:2816314/91‑1 (MQ=255)

                       tCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCAc                                                                     <  1:3548271/91‑1 (MQ=255)

                          tttGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACttt                                                                  <  1:3372235/91‑1 (MQ=255)

                            tGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTc                                                                >  1:3726098/1‑91 (MQ=255)

                            tGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTc                                                                <  1:1138898/91‑1 (MQ=255)

                            tGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTc                                                                >  1:4115102/1‑91 (MQ=255)

                            tGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTc                                                                >  1:4113962/1‑91 (MQ=255)

                             ggAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCa                                                               >  1:115622/1‑91 (MQ=255)

                             ggAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCa                                                               >  1:3173102/1‑91 (MQ=255)

                             ggAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCa                                                               <  1:1497428/91‑1 (MQ=255)

                               agaACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAg                                                             <  1:3783755/91‑1 (MQ=255)

                                  aCCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGAtt                                                          >  1:973742/1‑91 (MQ=255)

                                    cGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCt                                                        >  1:1994772/1‑91 (MQ=255)

                                    cGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCt                                                        >  1:1995091/1‑91 (MQ=255)

                                      aaGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCtaa                                                      <  1:2967617/91‑1 (MQ=255)

                                       aGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCtaat                                                     >  1:73867/1‑91 (MQ=255)

                                       aGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCtaat                                                     >  1:3810296/1‑91 (MQ=255)

                                        gTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCtaata                                                    >  1:2713970/1‑91 (MQ=255)

                                        gTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCtaata                                                    <  1:4024266/91‑1 (MQ=255)

                                            tCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAatat                                                <  1:3490491/91‑1 (MQ=255)

                                            tCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAatat                                                >  1:2152144/1‑91 (MQ=255)

                                             ccATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaaaatggaaaacttcggttctccaaaagaaattacttcttttg                                               <  1:52584‑M2/91‑46 (MQ=255)

                                             ccATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATAtt                                               >  1:2627604/1‑91 (MQ=255)

                                             ccATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATAtt                                               >  1:3441101/1‑91 (MQ=255)

                                               aTTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaaaatggaaaacttcggttctccaaaagaaattacttcttttgtt                                             <  1:2359675‑M2/91‑48 (MQ=255)

                                               aTTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaaaatggaaaacttcggttctccaaaagaaattacttcttttgtt                                             <  1:2358886‑M2/91‑48 (MQ=255)

                                                ttttCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCAt                                            <  1:2582137/91‑1 (MQ=255)

                                                 tttCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaaaatggaaaacttcggttctccaaaagaaattacttcttttgttat                                           <  1:149733‑M2/91‑50 (MQ=255)

                                                  ttcttcATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGa                                          <  1:3359372/91‑1 (MQ=255)

                                                  ttcttcATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGa                                          <  1:3444567/91‑1 (MQ=255)

                                                    cttcATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaaaatggaaaacttcggttctccaaaagaaattacttcttttgttatacc                                        <  1:3869185‑M2/91‑53 (MQ=255)

                                                    cttcATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaaaatggaaaacttcggttctccaaaagaaattacttcttttgttatacc                                        <  1:2970690‑M2/91‑53 (MQ=255)

                                                    cttcATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGata                                        >  1:1806199/1‑91 (MQ=255)

                                                      tcatcaTTACAGGAAGTACAGCTTCCGAACTTGATGTagaaaatggaaaacttcggttctccaaaagaaattacttcttttgttataccaa                                      <  1:3346168‑M2/91‑55 (MQ=255)

                                                         tcatTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAAt                                   >  1:1258273/1‑91 (MQ=255)

                                                         tcatTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAAt                                   >  1:3835871/1‑91 (MQ=255)

                                                         tcatTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAAt                                   >  1:1225638/1‑91 (MQ=255)

                                                          catTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATa                                  <  1:3101248/91‑1 (MQ=255)

                                                            ttACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATAcc                                <  1:938755/91‑1 (MQ=255)

                                                            ttACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATAcc                                <  1:1559794/91‑1 (MQ=255)

                                                              aCAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACcac                              <  1:2402662/91‑1 (MQ=255)

                                                               cAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACcaca                             >  1:1506224/1‑91 (MQ=255)

                                                               cAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACcaca                             >  1:1506545/1‑91 (MQ=255)

                                                                aGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACcacac                            >  1:2472352/1‑91 (MQ=255)

                                                                aGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACcacac                            >  1:819724/1‑91 (MQ=255)

                                                                 ggAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACcacaca                           <  1:3437640/91‑1 (MQ=255)

                                                                 ggAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACcacaca                           <  1:1589761/91‑1 (MQ=255)

                                                                 ggAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACcacaca                           <  1:2177318/91‑1 (MQ=255)

                                                                 ggAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACcacaca                           <  1:2175823/91‑1 (MQ=255)

                                                                 ggAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACcacaca                           <  1:2820850/91‑1 (MQ=255)

                                                                 ggAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACcacaca                           <  1:827781/91‑1 (MQ=255)

                                                                 ggAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACcacaca                           >  1:485808/1‑91 (MQ=255)

                                                                 ggAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACcacaca                           <  1:3438653/91‑1 (MQ=255)

                                                                    aGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACCACACATcc                        >  1:219179/1‑91 (MQ=255)

                                                                    aGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACCACACATcc                        >  1:2133727/1‑91 (MQ=255)

                                                                    aGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACCACACATcc                        >  1:2756777/1‑91 (MQ=255)

                                                                        cAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACCACACATCCATGc                    >  1:230059/1‑91 (MQ=255)

                                                                        cAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACCACACATCCATGc                    >  1:230107/1‑91 (MQ=255)

                                                                               cGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACCACACATCCATGCAACTAGt             <  1:2924291/91‑1 (MQ=255)

                                                                                gAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACCACACATCCATGCAACTAGTc            >  1:1336056/1‑91 (MQ=255)

                                                                                gAACTTGATGTAGAAAATGCTAAAAGCAACTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACCACACATCCATGCAACTAGTc            <  1:2309466/91‑1 (MQ=255)

                                                                                     tGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACCACACATCCATGCAACTAGTCCTAGt       <  1:1233346/91‑1 (MQ=255)

                                                                                       aTGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACCACACATCCATGCAACTAGTCCTAGtat     >  1:2617436/1‑91 (MQ=255)

                                                                                        tGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACCACACATCCATGCAACTAGTCCTAGtata    >  1:1815835/1‑91 (MQ=255)

                                                                                        tGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACCACACATCCATGCAACTAGTCCTAGtata    >  1:1816479/1‑91 (MQ=255)

                                                                                        tGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACCACACATCCATGCAACTAGTCCTAGtata    <  1:2153617/91‑1 (MQ=255)

                                                                                         gTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACCACACATCCATGCAACTAGTCCTAGTATAg   <  1:2139876/91‑1 (MQ=255)

                                                                                         gTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACCACACATCCATGCAACTAGTCCTAGTATAg   <  1:1008545/91‑1 (MQ=255)

                                                                                         gTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACCACACATCCATGCAACTAGTCCTAGTATAg   <  1:1007816/91‑1 (MQ=255)

TTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATATTAATACCACACATCCATGCAACTAGTCCTAGTATAGC  >  USA300TCH1516_ALE/2505465‑2505645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.