BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2505518	90 (0.920)	7 (0.080)	5/144	NT	7.8%	coding (860/1278 nt)	gltT	Proton/sodium‑glutamate symport protein
*	?	USA300TCH1516_ALE	= 2505555	84 (0.950)	7 (0.080)	5/144	NT	7.8%	coding (823/1278 nt)	gltT	Proton/sodium‑glutamate symport protein

Only 100 of 129 total aligned reads displayed.

AAAGTGCTGATCCATCTAAGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATA  >  USA300TCH1516_ALE/2505429‑2505607

aaaGTGCTGATCCATCTAAGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTttctt                                                                                          <  1:2802703/91‑1 (MQ=255)

aaaGTGCTGATCCATCTAAGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTttctt                                                                                          >  1:849700/1‑91 (MQ=255)

 aaGTGCTGATCCATCTAAGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTttcttc                                                                                         >  1:3887708/1‑91 (MQ=255)

 aaGTGCTGATCCATCTAAGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTttcttc                                                                                         >  1:2565002/1‑91 (MQ=255)

   gTGCTGATCCATCTAAGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTtcat                                                                                       >  1:4089261/1‑91 (MQ=255)

       tGATCCATCTAAGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCAtt                                                                                   <  1:1194861/91‑1 (MQ=255)

       tGATCCATCTAAGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCAtt                                                                                   <  1:1196222/91‑1 (MQ=255)

               cTAAGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAg                                                                           <  1:2594106/91‑1 (MQ=255)

                  aGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAgctg                                                                        <  1:3440996/91‑4 (MQ=255)

                  aGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAgctg                                                                        <  1:3436482/91‑4 (MQ=255)

                  aGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTAc                                                                        <  1:2131785/91‑1 (MQ=255)

                     tAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGc                                                                     <  1:1530261/91‑1 (MQ=255)

                      aaaCGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCt                                                                    <  1:2637336/91‑1 (MQ=255)

                      aaaCGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCt                                                                    >  1:3242685/1‑91 (MQ=255)

                       aaCGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCtt                                                                   >  1:3900922/1‑91 (MQ=255)

                       aaCGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCtt                                                                   >  1:192964/1‑91 (MQ=255)

                       aaCGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGCACAGCtt                                                                   >  1:2064484/1‑91 (MQ=255)

                        aCGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTc                                                                  >  1:927348/1‑91 (MQ=255)

                          gTATAAGCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCg                                                                >  1:3222833/1‑91 (MQ=255)

                          gTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCg                                                                <  1:3372959/91‑1 (MQ=255)

                            ataACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGaa                                                              >  1:4014692/1‑91 (MQ=255)

                            ataACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGaa                                                              >  1:885699/1‑91 (MQ=255)

                             taACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTGCAGCTTCCGAAc                                                             <  1:3201111/91‑1 (MQ=255)

                             taACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAAc                                                             >  1:470833/1‑91 (MQ=255)

                              aaCCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGGAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACt                                                            <  1:3284762/91‑1 (MQ=255)

                              aaCCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGGAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACt                                                            <  1:3284788/91‑1 (MQ=255)

                              aaCCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGCAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACt                                                            <  1:3284787/91‑1 (MQ=255)

                               aCCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACtt                                                           >  1:1299970/1‑91 (MQ=255)

                                 cAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGa                                                         <  1:787158/91‑1 (MQ=255)

                                  aaTTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGAt                                                        >  1:3042545/1‑91 (MQ=255)

                                   aTTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATg                                                       <  1:437414/91‑1 (MQ=255)

                                   aTTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATg                                                       <  1:65113/91‑1 (MQ=255)

                                   aTTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATg                                                       >  1:302343/1‑91 (MQ=255)

                                    ttGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTacatcaagttcggaagctgtacttcctgtaatgatga                                                      <  1:3346168‑M1/91‑38 (MQ=255)

                                      ggTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTacatcaagttcggaagctgtacttcctgtaatgatgaag                                                    <  1:3869185‑M1/91‑40 (MQ=255)

                                      ggTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTacatcaagttcggaagctgtacttcctgtaatgatgaag                                                    <  1:2970690‑M1/91‑40 (MQ=255)

                                      ggTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTag                                                    >  1:2142909‑M2/1‑89 (MQ=255)

                                        tataACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaa                                                  <  1:1961626‑M2/91‑5 (MQ=255)

                                        tataACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaa                                                  <  1:3889849‑M2/91‑5 (MQ=255)

                                        tataACAAAAGAAGTAACTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaa                                                  <  1:3889829‑M2/91‑5 (MQ=255)

                                         ataACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTacatcaagttcggaagctgtacttcctgtaatgatgaagaaa                                                 <  1:149733‑M1/91‑43 (MQ=255)

                                         ataACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaaa                                                 <  1:686777‑M2/91‑6 (MQ=255)

                                         ataACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaaa                                                 <  1:2283879‑M2/91‑6 (MQ=255)

                                          taACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaaaa                                                <  1:1793117‑M2/91‑7 (MQ=255)

                                           aaCAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTacatcaagttcggaagctgtacttcctgtaatgatgaagaaaat                                               <  1:2358886‑M1/91‑45 (MQ=255)

                                           aaCAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTacatcaagttcggaagctgtacttcctgtaatgatgaagaaaat                                               <  1:2359675‑M1/91‑45 (MQ=255)

                                            aCAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaaaatg                                              <  1:1283230‑M2/91‑9 (MQ=255)

                                             cAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTacatcaagttcggaagctgtacttcctgtaatgatgaagaaaatgg                                             <  1:52584‑M1/91‑47 (MQ=255)

                                                aagaagTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTaa                                          >  1:3108377/1‑91 (MQ=255)

                                                   aagTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAg                                       >  1:1931369/1‑91 (MQ=255)

                                                    agTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGc                                      >  1:4100948/1‑91 (MQ=255)

                                                      ttacttCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCaa                                    >  1:3191810/5‑91 (MQ=255)

                                                      ttacttCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCaa                                    >  1:2524963/5‑91 (MQ=255)

                                                      tAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCaa                                    <  1:3247554/91‑1 (MQ=255)

                                                       aaTTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAAt                                   >  1:3431314/1‑91 (MQ=255)

                                                       aaTTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAAt                                   <  1:470118/91‑1 (MQ=255)

                                                       aaTTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAAt                                   >  1:62935/1‑91 (MQ=255)

                                                       aaTTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAAt                                   >  1:956297/1‑91 (MQ=255)

                                                        aTTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAAtt                                  <  1:2091968/91‑1 (MQ=255)

                                                        aTTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAAtt                                  >  1:3020345/1‑91 (MQ=255)

                                                           tCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCGATTCAc                               <  1:3224167/91‑1 (MQ=255)

                                                           tCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCAc                               <  1:2816314/91‑1 (MQ=255)

                                                           tCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCAc                               <  1:3548271/91‑1 (MQ=255)

                                                              tttGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACttt                            <  1:3372235/91‑1 (MQ=255)

                                                                tGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTc                          >  1:3726098/1‑91 (MQ=255)

                                                                tGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTc                          >  1:4113962/1‑91 (MQ=255)

                                                                tGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTc                          >  1:4115102/1‑91 (MQ=255)

                                                                tGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTc                          <  1:1138898/91‑1 (MQ=255)

                                                                 ggAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCa                         >  1:115622/1‑91 (MQ=255)

                                                                 ggAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCa                         <  1:1497428/91‑1 (MQ=255)

                                                                 ggAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCa                         >  1:3173102/1‑91 (MQ=255)

                                                                   agaACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAg                       <  1:3783755/91‑1 (MQ=255)

                                                                      aCCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGAtt                    >  1:973742/1‑91 (MQ=255)

                                                                        cGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCt                  >  1:1995091/1‑91 (MQ=255)

                                                                          aaGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGCTGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCtaa                <  1:3590022/91‑1 (MQ=255)

                                                                          aaGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCtaa                <  1:2967617/91‑1 (MQ=255)

                                                                           aGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCtaat               >  1:3810296/1‑91 (MQ=255)

                                                                            gTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCtaata              >  1:2713970/1‑91 (MQ=255)

                                                                            gTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCtaata              <  1:2906619/91‑1 (MQ=255)

                                                                            gTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCtaata              <  1:4024266/91‑1 (MQ=255)

                                                                                tCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAatat          <  1:3490491/91‑1 (MQ=255)

                                                                                tCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAatat          >  1:2152144/1‑91 (MQ=255)

                                                                                 ccATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATAtt         >  1:2627604/1‑91 (MQ=255)

                                                                                 ccATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATAtt         >  1:2205751/1‑91 (MQ=255)

                                                                                  cATTTTCTacatcaagttcggaagctgtacttcctgtaatgatgaagaaaatggaaaacttcggttctccaaaagaaattacttcttttgt        <  1:1283230‑M1/91‑84 (MQ=255)

                                                                                   aTTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaaaatggaaaacttcggttctccaaaagaaattacttcttttgtt       <  1:2359675‑M2/91‑48 (MQ=255)

                                                                                   aTTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaaaatggaaaacttcggttctccaaaagaaattacttcttttgtt       <  1:2358886‑M2/91‑48 (MQ=255)

                                                                                    ttttCTacatcaagttcggaagctgtacttcctgtaatgatgaagaaaatggaaaacttcggttctccaaaagaaattacttcttttgtta      <  1:1793117‑M1/91‑86 (MQ=255)

                                                                                    ttttCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCAt      <  1:2582137/91‑1 (MQ=255)

                                                                                     tttCTacatcaagttcggaagctgtacttcctgtaatgatgaagaaaatggaaaacttcggttctccaaaagaaattacttcttttgttat     <  1:2283879‑M1/91‑87 (MQ=255)

                                                                                     tttCTacatcaagttcggaagctgtacttcctgtaatgatgaagaaaatggaaaacttcggttctccaaaagaaattacttcttttgttat     <  1:686777‑M1/91‑87 (MQ=255)

                                                                                     tttCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaaaatggaaaacttcggttctccaaaagaaattacttcttttgttat     <  1:149733‑M2/91‑50 (MQ=255)

                                                                                      ttcttcATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGa    <  1:3444567/91‑1 (MQ=255)

                                                                                      ttcttcATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGa    <  1:3359372/91‑1 (MQ=255)

                                                                                      ttCTacatcaagttcggaagctgtacttcctgtaatgatgaagaaaatggaaaacttcggttctccaaaagaaattacttcttttgttata    <  1:1961626‑M1/91‑88 (MQ=255)

                                                                                      ttCTacatcaagttcggaagctgtacttcctgtaatgatgaagaaaatggaaaacttcggttctccaaaagaaattacttcttttgttata    <  1:3889849‑M1/91‑88 (MQ=255)

                                                                                        cttcATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaaaatggaaaacttcggttctccaaaagaaattacttcttttgttatacc  <  1:3869185‑M2/91‑53 (MQ=255)

                                                                                        cttcATCATTACAGGAAGTACAGCTTCCGAACTTGATGTagaaaatggaaaacttcggttctccaaaagaaattacttcttttgttatacc  <  1:2970690‑M2/91‑53 (MQ=255)

                                                                                        cttcATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGata  >  1:1806199/1‑91 (MQ=255)

                                                                                        cTacatcaagttcggaagctgtacttcctgtaatgatgaagaaaatggaaaacttcggttctccaaaagaaattacttcttttgttatacc  >  1:2142909‑M1/1‑2 (MQ=255)

AAAGTGCTGATCCATCTAAGTTAAACGTATAACCAATTGGTATAACAAAAGAAGTAATTTCTTTTGGAGAACCGAAGTTTTCCATTTTCTTCATCATTACAGGAAGTACAGCTTCCGAACTTGATGTAGAAAATGCTAAAAGCAATTCACTTTTCAAGATTCTAATAATATTCATGATA  >  USA300TCH1516_ALE/2505429‑2505607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.