| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2520880 | 81 (0.820) | 5 (0.050) | 5/150 | NT | 6.1% | intergenic (‑249/+60) | narG/nasF | Respiratory nitrate reductase 1 alpha chain/Uroporphyrinogen‑III C‑methyltransferase |
| ? | USA300TCH1516_ALE | = 2520911 | 77 (0.840) | intergenic (‑280/+29) | narG/nasF | Respiratory nitrate reductase 1 alpha chain/Uroporphyrinogen‑III C‑methyltransferase | |||||
AATAACGGGATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2520787‑2520880‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaggTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTATTTGTCGTTGTGCCAAATTTGAACGATTTAGATTGGCAATAAGCATGACCATA < USA300TCH1516_ALE/2520911‑2520823 AATAACGGGATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATA < 1:3752177/91‑1AATAACGGGATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATA > 1:4082584/1‑91 TAACGGGATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAG > 1:108521/1‑91 TAACGGGATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAG < 1:2746536/91‑1 ACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACCGAGAGAATATATTCGT < 1:3080006/91‑1 GTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGC < 1:1034244/91‑1 TATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCC < 1:1741411/91‑1 TGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTT < 1:1795151/91‑1 TCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTATT < 1:564/91‑1 TAAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTATTTGTCGTTGTGCCAAATTTGAACGATTTAGATTGGCAATAAGCATGACC > 1:3427726/1‑91 AAGGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTATTTGTCGTTGTGCCAAATTTGAACGATTTAGATTGGCAATAAGCATGACCA > 1:1730883/1‑91 GGTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTATTTGTCGTTGTGCCAAATTTGAACGATTTAGATTGGCAATAAGCATGACCATA < 1:2030535/91‑1 AATAACGGGATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2520787‑2520880‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaggTTTCAACCGAGAGAATATATTCGTGTTGAAGCCTTATTTGTCGTTGTGCCAAATTTGAACGATTTAGATTGGCAATAAGCATGACCATA < USA300TCH1516_ALE/2520911‑2520823 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |