| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2520880 | 81 (0.820) | 5 (0.050) | 5/150 | NT | 6.1% | intergenic (‑249/+60) | narG/nasF | Respiratory nitrate reductase 1 alpha chain/Uroporphyrinogen‑III C‑methyltransferase |
| ? | USA300TCH1516_ALE | = 2520911 | 77 (0.840) | intergenic (‑280/+29) | narG/nasF | Respiratory nitrate reductase 1 alpha chain/Uroporphyrinogen‑III C‑methyltransferase | |||||
TATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTT > USA300TCH1516_ALE/2520823‑2521001 | tATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAAcc < 1:2030535‑M2/91‑3 (MQ=255) tGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAAcctt > 1:1730883‑M2/1‑87 (MQ=255) ggTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAAcctta > 1:3427726‑M2/1‑86 (MQ=255) gTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGCTGAAACcttac > 1:3767059/1‑91 (MQ=255) aTGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACcttactta < 1:3680685/91‑1 (MQ=255) cTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTc < 1:1058991/91‑1 (MQ=255) cTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTc < 1:1059131/91‑1 (MQ=255) ttATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCa < 1:2381880/91‑1 (MQ=255) ttATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCa < 1:2085114/91‑1 (MQ=255) ttATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCa < 1:2524343/91‑1 (MQ=255) ttATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCa > 1:880922/1‑91 (MQ=255) aTTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCatt > 1:441400/1‑91 (MQ=255) aTTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCatt < 1:1800282/91‑1 (MQ=255) aTTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCatt > 1:2618969/1‑91 (MQ=255) ttGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCattt > 1:3325244/1‑91 (MQ=255) tGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCattta < 1:1519725/91‑1 (MQ=255) tGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCattta > 1:3832061/1‑91 (MQ=255) tGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCattta > 1:3832109/1‑91 (MQ=255) ccAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCatttata < 1:2197444/91‑2 (MQ=255) cAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCatttattt > 1:4112522/1‑91 (MQ=255) cAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCatttattt > 1:4111362/1‑91 (MQ=255) cAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCatttattt > 1:2651475/1‑91 (MQ=255) tCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTAtttttt < 1:235914/91‑1 (MQ=255) cTAAATCGTTCAAATTTGGCACAACGACAAATGAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTGTTCATTTATTTTTta < 1:3537760/91‑1 (MQ=255) cTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTta < 1:3789555/91‑1 (MQ=255) cTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTta < 1:3671766/91‑1 (MQ=255) cTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTta < 1:3670788/91‑1 (MQ=255) cTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTta < 1:2476888/91‑1 (MQ=255) cTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTta < 1:3670815/91‑1 (MQ=255) cTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTta < 1:2476830/91‑1 (MQ=255) aaaTCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTtata < 1:3004920/91‑1 (MQ=255) aaTCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATaa > 1:3884671/1‑91 (MQ=255) aTCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATaaa > 1:315611/1‑91 (MQ=255) aTCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATaaa > 1:3047463/1‑91 (MQ=255) tCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGt > 1:3307765/1‑91 (MQ=255) tCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGt > 1:3307649/1‑91 (MQ=255) aaaTTTGGCACAACGATAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGa < 1:2328266/91‑1 (MQ=255) aaaTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGa > 1:842114/1‑91 (MQ=255) aaTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGAc > 1:3596164/1‑91 (MQ=255) aaTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGAc > 1:3596066/1‑91 (MQ=255) aaTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGAc > 1:3577525/1‑91 (MQ=255) aaTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGAc > 1:3575412/1‑91 (MQ=255) ttGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATa < 1:1097512/91‑1 (MQ=255) ggCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAac < 1:1151730/91‑1 (MQ=255) gCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAaca < 1:1005835/91‑1 (MQ=255) cacaACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAacac < 1:4078906/91‑1 (MQ=255) cacaACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAacac > 1:1060488/1‑91 (MQ=255) caACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCGTTTATTTTTTATAAATTAGTGACATAACACTg < 1:3984430/91‑1 (MQ=255) gACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTAtt < 1:2191562/91‑1 (MQ=255) gACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTAtt < 1:633586/91‑1 (MQ=255) aCAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTa > 1:2024670/1‑91 (MQ=255) cAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAg > 1:3176487/1‑91 (MQ=255) cAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAg > 1:3176388/1‑91 (MQ=255) aaaTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGc > 1:160781/1‑91 (MQ=255) aaTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAAccttatttgtcgttgtgccaaatttgaacgatttagattggcaataagcatga < 1:564‑M2/91‑54 (MQ=255) aaTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCa > 1:3445992/1‑91 (MQ=255) tAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATc > 1:2314691/1‑91 (MQ=255) aaGGCTTCAACACGAATATATTCTCTCGGTTGAAAccttatttgtcgttgtgccaaatttgaacgatttagattggcaataagcatgacca < 1:1795151‑M2/91‑57 (MQ=255) aGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTg > 1:3745757/1‑91 (MQ=255) aGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTg > 1:3745870/1‑91 (MQ=255) aGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTg > 1:1628724/1‑91 (MQ=255) ggCTTCAACACGAATATATTCTCTCGGTTGAAAccttatttgtcgttgtgccaaatttgaacgatttagattggcaataagcatgaccata < 1:1741411‑M2/91‑59 (MQ=255) ggCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGc < 1:2672409/91‑1 (MQ=255) gCTTCAACACGAATATATTCTCTCGGTTGAAAccttatttgtcgttgtgccaaatttgaacgatttagattggcaataagcatgaccatac < 1:1034244‑M2/91‑60 (MQ=255) cTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCAc < 1:4077712/91‑1 (MQ=255) cTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCAc < 1:4076044/91‑1 (MQ=255) tCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGa < 1:1231518/91‑1 (MQ=255) cAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGAt > 1:914490/1‑91 (MQ=255) cAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGAt < 1:1046442/91‑1 (MQ=255) cAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGAt < 1:3105193/91‑1 (MQ=255) aaCACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATc > 1:3482441/1‑91 (MQ=255) cacGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCgg < 1:1537788/91‑1 (MQ=255) acGAATATATTCTCTCGGTTGAAGccttatttgtcgttgtgccaaatttgaacgatttagattggcaataagcatgaccatacatgattgt < 1:3080006‑M2/91‑68 (MQ=255) acGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGt < 1:2341592/91‑1 (MQ=255) acGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGt > 1:4022893/1‑91 (MQ=255) acGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGt < 1:1640320/91‑1 (MQ=255) cGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTTGTGACATAACACTGTATTAGCATCTGCACGATCGGtt < 1:3503170/91‑1 (MQ=255) cGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTGGTGACATAACACTGTATTAGCATCTGCACGATCGGtt < 1:3505142/91‑1 (MQ=255) gAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTg < 1:1668447/91‑1 (MQ=255) tatTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAata < 1:3371182/91‑1 (MQ=255) atTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAatat > 1:611650/1‑91 (MQ=255) ttCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAatata > 1:3873881/1‑91 (MQ=255) ctcGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGtt > 1:1219914/1‑91 (MQ=255) ctcGGTTGAAACCTTACTTATCCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGtt < 1:58588/91‑1 (MQ=255) cGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTAc < 1:2907779/91‑1 (MQ=255) cGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTAc < 1:2908667/91‑1 (MQ=255) gTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACAt > 1:3380043/1‑91 (MQ=255) gAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACAtttt < 1:862755/91‑1 (MQ=255) aaaCCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAGTATATGTTACATTTTc < 1:1790077/91‑1 (MQ=255) aaaCCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTc > 1:3926821/1‑91 (MQ=255) aaaCCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTc < 1:614591/91‑1 (MQ=255) aCCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCtt < 1:1838062/91‑1 (MQ=255) | TATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCACGATCGGTTGAAATATATGTTACATTTTCTT > USA300TCH1516_ALE/2520823‑2521001 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |