BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2520880	81 (0.820)	5 (0.050)	5/150	NT	6.1%	intergenic (‑249/+60)	narG/nasF	Respiratory nitrate reductase 1 alpha chain/Uroporphyrinogen‑III C‑methyltransferase
*	?	USA300TCH1516_ALE	= 2520911	77 (0.840)	5 (0.050)	5/150	NT	6.1%	intergenic (‑280/+29)	narG/nasF	Respiratory nitrate reductase 1 alpha chain/Uroporphyrinogen‑III C‑methyltransferase

Only 100 of 107 total aligned reads displayed.

ACGGGATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCA  >  USA300TCH1516_ALE/2520791‑2520970

aCGGGATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGc                                                                                           >  1:299921/1‑91 (MQ=255)

aCGGGATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGc                                                                                           >  1:497981/1‑91 (MQ=255)

 cGGGATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCt                                                                                          >  1:1412801/1‑91 (MQ=255)

 cGGGATCTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCt                                                                                          >  1:3229251/1‑91 (MQ=255)

    gATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCa                                                                                       >  1:2495294/1‑91 (MQ=255)

       ttCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAaca                                                                                    >  1:2398798/1‑91 (MQ=255)

       ttCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAaca                                                                                    >  1:2398780/1‑91 (MQ=255)

         cATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACg                                                                                  >  1:2698327/1‑91 (MQ=255)

         cATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACg                                                                                  >  1:2459206/1‑91 (MQ=255)

          aTTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGa                                                                                 >  1:3083084/1‑91 (MQ=255)

           ttGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGaa                                                                                <  1:3365906/91‑1 (MQ=255)

            tGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAat                                                                               <  1:3988086/91‑1 (MQ=255)

             gAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAata                                                                              <  1:2356848/91‑1 (MQ=255)

             gAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAata                                                                              <  1:3407214/91‑1 (MQ=255)

              aaaTAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAatat                                                                             >  1:2001726/1‑91 (MQ=255)

               aataatACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAatata                                                                            >  1:2683334/1‑91 (MQ=255)

                 taataCACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATAtt                                                                          >  1:2546438/1‑91 (MQ=255)

                 taataCACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATAtt                                                                          <  1:3897663/91‑1 (MQ=255)

                  aataCACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATtc                                                                         <  1:3723507/91‑1 (MQ=255)

                    taCACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATtctc                                                                       <  1:3788714/91‑1 (MQ=255)

                    taCACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATtctc                                                                       >  1:4126327/1‑91 (MQ=255)

                     acacAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATtctct                                                                      <  1:3549507/91‑1 (MQ=255)

                     acacAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATtctct                                                                      >  1:1168730/1‑91 (MQ=255)

                      cacaATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATtctctc                                                                     <  1:3209311/91‑1 (MQ=255)

                       acaATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGcttcaaccgagagaatatattcgt                                                                    <  1:3080006‑M1/91‑25 (MQ=255)

                       acaATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCg                                                                    >  1:2926683/1‑91 (MQ=255)

                          aTCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAGCGACAAATAAGGCTTCAACACGAATATATTCGCTCGGtt                                                                 <  1:1225055/91‑1 (MQ=255)

                          aTCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGtt                                                                 <  1:2598695/91‑1 (MQ=255)

                           tCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTg                                                                <  1:787224/91‑1 (MQ=255)

                            cATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGa                                                               <  1:3157831/91‑1 (MQ=255)

                            cATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGa                                                               <  1:2968814/91‑1 (MQ=255)

                             aTGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGaa                                                              >  1:1252619/1‑91 (MQ=255)

                             aTGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGaa                                                              <  1:4067083/91‑1 (MQ=255)

                               gTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGtttcaaccgagagaatatattcgtgttgaagc                                                            <  1:1034244‑M1/91‑33 (MQ=255)

                                tATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGtttcaaccgagagaatatattcgtgttgaagcc                                                           <  1:1741411‑M1/91‑34 (MQ=255)

                                tATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAAcc                                                           <  1:2030535‑M2/91‑3 (MQ=255)

                                  tGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGtttcaaccgagagaatatattcgtgttgaagcctt                                                         <  1:1795151‑M1/91‑36 (MQ=255)

                                  tGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAAcctt                                                         >  1:1730883‑M2/1‑87 (MQ=255)

                                   ggTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAAcctta                                                        >  1:3427726‑M2/1‑86 (MQ=255)

                                    gTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGCTGAAACcttac                                                       >  1:3767059/1‑91 (MQ=255)

                                     tCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGtttcaaccgagagaatatattcgtgttgaagccttatt                                                      <  1:564‑M1/91‑39 (MQ=255)

                                       aTGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACcttactta                                                    <  1:3680685/91‑1 (MQ=255)

                                          cTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTc                                                 <  1:1059131/91‑1 (MQ=255)

                                          cTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTc                                                 <  1:1058991/91‑1 (MQ=255)

                                           ttATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCa                                                >  1:880922/1‑91 (MQ=255)

                                           ttATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCa                                                <  1:2085114/91‑1 (MQ=255)

                                           ttATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCa                                                <  1:2524343/91‑1 (MQ=255)

                                           ttATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCa                                                <  1:2381880/91‑1 (MQ=255)

                                             aTTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCatt                                              >  1:2618969/1‑91 (MQ=255)

                                             aTTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCatt                                              <  1:1800282/91‑1 (MQ=255)

                                             aTTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCatt                                              >  1:441400/1‑91 (MQ=255)

                                              ttGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCattt                                             >  1:3325244/1‑91 (MQ=255)

                                               tGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCattta                                            <  1:1519725/91‑1 (MQ=255)

                                               tGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCattta                                            >  1:3832109/1‑91 (MQ=255)

                                               tGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCattta                                            >  1:3832061/1‑91 (MQ=255)

                                                 ccAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCatttata                                          <  1:2197444/91‑2 (MQ=255)

                                                  cAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCatttattt                                         >  1:4111362/1‑91 (MQ=255)

                                                  cAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCatttattt                                         >  1:4112522/1‑91 (MQ=255)

                                                     tCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTAtttttt                                      <  1:235914/91‑1 (MQ=255)

                                                      cTAAATCGTTCAAATTTGGCACAACGACAAATGAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTGTTCATTTATTTTTta                                     <  1:3537760/91‑1 (MQ=255)

                                                      cTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTta                                     <  1:3789555/91‑1 (MQ=255)

                                                      cTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTta                                     <  1:3671766/91‑1 (MQ=255)

                                                      cTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTta                                     <  1:3670815/91‑1 (MQ=255)

                                                      cTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTta                                     <  1:3670788/91‑1 (MQ=255)

                                                      cTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTta                                     <  1:2476830/91‑1 (MQ=255)

                                                      cTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTta                                     <  1:2476888/91‑1 (MQ=255)

                                                        aaaTCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTtata                                   <  1:3004920/91‑1 (MQ=255)

                                                         aaTCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATaa                                  >  1:3884671/1‑91 (MQ=255)

                                                          aTCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATaaa                                 >  1:315611/1‑91 (MQ=255)

                                                          aTCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATaaa                                 >  1:3047463/1‑91 (MQ=255)

                                                               tCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGt                            >  1:3307649/1‑91 (MQ=255)

                                                               tCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGt                            >  1:3307765/1‑91 (MQ=255)

                                                                 aaaTTTGGCACAACGATAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGa                          <  1:2328266/91‑1 (MQ=255)

                                                                 aaaTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGa                          >  1:842114/1‑91 (MQ=255)

                                                                  aaTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGAc                         >  1:3596066/1‑91 (MQ=255)

                                                                  aaTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGAc                         >  1:3577525/1‑91 (MQ=255)

                                                                  aaTTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGAc                         >  1:3575412/1‑91 (MQ=255)

                                                                     ttGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATa                      <  1:1097512/91‑1 (MQ=255)

                                                                       ggCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAac                    <  1:1151730/91‑1 (MQ=255)

                                                                        gCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAaca                   <  1:1005835/91‑1 (MQ=255)

                                                                         cacaACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAacac                  >  1:1060488/1‑91 (MQ=255)

                                                                         cacaACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAacac                  <  1:4078906/91‑1 (MQ=255)

                                                                               gACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTAtt            <  1:633586/91‑1 (MQ=255)

                                                                               gACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTAtt            <  1:2191562/91‑1 (MQ=255)

                                                                                aCAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTa           >  1:2024670/1‑91 (MQ=255)

                                                                                 cAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAg          >  1:3176388/1‑91 (MQ=255)

                                                                                 cAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAg          >  1:3176487/1‑91 (MQ=255)

                                                                                  aaaTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGc         >  1:160781/1‑91 (MQ=255)

                                                                                   aaTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAAccttatttgtcgttgtgccaaatttgaacgatttagattggcaataagcatga        <  1:564‑M2/91‑54 (MQ=255)

                                                                                   aaTAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCa        >  1:3445992/1‑91 (MQ=255)

                                                                                     tAAGGtttcaaccgagagaatatattcgtgttgaagccttatttgtcgttgtgccaaatttgaacgatttagattggcaataagcatgacc      >  1:3427726‑M1/1‑5 (MQ=255)

                                                                                      aaGGtttcaaccgagagaatatattcgtgttgaagccttatttgtcgttgtgccaaatttgaacgatttagattggcaataagcatgacca     >  1:1730883‑M1/1‑4 (MQ=255)

                                                                                      aaGGCTTCAACACGAATATATTCTCTCGGTTGAAAccttatttgtcgttgtgccaaatttgaacgatttagattggcaataagcatgacca     <  1:1795151‑M2/91‑57 (MQ=255)

                                                                                       aGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTg    >  1:1628724/1‑91 (MQ=255)

                                                                                       aGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTg    >  1:3745870/1‑91 (MQ=255)

                                                                                       aGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTg    >  1:3745757/1‑91 (MQ=255)

                                                                                        ggtttcaaccgagagaatatattcgtgttgaagccttatttgtcgttgtgccaaatttgaacgatttagattggcaataagcatgaccata   <  1:2030535‑M1/91‑90 (MQ=255)

                                                                                        ggCTTCAACACGAATATATTCTCTCGGTTGAAAccttatttgtcgttgtgccaaatttgaacgatttagattggcaataagcatgaccata   <  1:1741411‑M2/91‑59 (MQ=255)

                                                                                        ggCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGc   <  1:2672409/91‑1 (MQ=255)

                                                                                         gCTTCAACACGAATATATTCTCTCGGTTGAAAccttatttgtcgttgtgccaaatttgaacgatttagattggcaataagcatgaccatac  <  1:1034244‑M2/91‑60 (MQ=255)

ACGGGATTTCATTGAAATAATACACAATCATGTATGGTCATGCTTATTGCCAATCTAAATCGTTCAAATTTGGCACAACGACAAATAAGGCTTCAACACGAATATATTCTCTCGGTTGAAACCTTACTTATTCATTTATTTTTTATAAATTAGTGACATAACACTGTATTAGCATCTGCA  >  USA300TCH1516_ALE/2520791‑2520970

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.