| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2533537 = | 78 (0.790) | 9 (0.100) | 6/142 | NT | 11.4% | intergenic (+33/+64) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC |
| ? | USA300TCH1516_ALE | 2533595 = | 70 (0.800) | intergenic (+91/+6) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC | |||||
AAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCGTGGTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2533634‑2533537‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTC > USA300TCH1516_ALE/2533595‑2533684 AAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCG > 1:1849876/1‑91AAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCG > 1:2132235/1‑91AAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCG > 1:4045940/1‑91 AGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCGT > 1:1354238/1‑91 AGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCGT > 1:1353801/1‑91 AGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCGT < 1:2492630/91‑1 ACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑TCATGATGCGTGG < 1:3197786/91‑1 ACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCGTGG < 1:3197801/91‑1 GTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCGTGGTT > 1:3801821/1‑91 GTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCGTGGTT < 1:2720305/91‑1 TTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCGTGGTTC < 1:2663183/91‑1 TTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCGTGGTTCT < 1:3362145/91‑1 TTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCGTGGTTCT < 1:3932949/91‑1 TTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCGTGGTTCT > 1:2454479/1‑91 ATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCGTGGTTCTATTTGATTATTC > 1:177151/1‑91 ATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGACGATGAAGCCATACTAAAACATGATACGTGGTTCTATTTGATT > 1:2352157/1‑91 ACGTATCATGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCT > 1:2294483/1‑91 ACGTATCATGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCT > 1:4093847/1‑91 CGTATCATGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTT > 1:1423780/1‑91 CATGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTC > 1:398170/1‑91 TGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTT > 1:934853/1‑91 TGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTT > 1:934969/1‑91 TAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTT > 1:4049499/1‑91 GTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCC < 1:343600/91‑1 GTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCC < 1:938779/91‑1 GTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCC < 1:3110041/91‑1 GTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCC < 1:1918895/91‑1 GTGATTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCC < 1:3217517/91‑1 GGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCT < 1:4124404/91‑1 GTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTT < 1:2534146/91‑1 TTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTGATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTG < 1:3316029/91‑1 TTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTG < 1:3472856/91‑1 TTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTG < 1:2361563/91‑1 TTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTG < 1:2159875/91‑1 CTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGTGCCCCTTGTT > 1:197004/1‑91 CTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTT < 1:875993/91‑1 CTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTT > 1:197003/1‑91 TATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTC < 1:1768153/91‑1 AAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATA‑T‑‑‑ACATGATGCGTGGTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2533634‑2533537‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTC > USA300TCH1516_ALE/2533595‑2533684 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |