| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2533537 = | 78 (0.790) | 9 (0.100) | 6/142 | NT | 11.4% | intergenic (+33/+64) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC |
| ? | USA300TCH1516_ALE | 2533595 = | 70 (0.800) | intergenic (+91/+6) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC | |||||
Only 100 of 147 total aligned reads displayed.
GCCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAA > USA300TCH1516_ALE/2533447‑2533627 | gaacaaggggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaata < 1:1768153‑M1/1‑1 (MQ=255)gCCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAA < 1:2467385‑M1/91‑1 (MQ=255)gCCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAA > 1:2323603‑M1/1‑91 (MQ=255) ccTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAGTATCGCTCCAAGATTATGACAACATAACAAAG > 1:3544669‑M1/1‑91 (MQ=255) ccTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAG > 1:2324496‑M1/1‑91 (MQ=255) ccTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAG > 1:2812437‑M1/1‑91 (MQ=255) ccTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAG > 1:3086609‑M1/1‑91 (MQ=255) aacaaggggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAg < 1:875993‑M1/2‑1 (MQ=255) aacaaggggcaccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAg > 1:197004‑M1/90‑91 (MQ=255) tATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAA < 1:2139150‑M1/91‑1 (MQ=255) caaggggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGaa < 1:3472856‑M1/4‑1 (MQ=255) caaggggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGaa < 1:2361563‑M1/4‑1 (MQ=255) caaggggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGaa < 1:2159875‑M1/4‑1 (MQ=255) aTCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAAC > 1:3428016‑M1/1‑91 (MQ=255) tCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACC < 1:1830187‑M1/91‑1 (MQ=255) tCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACC < 1:2632974‑M1/91‑1 (MQ=255) tCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACC < 1:3694095‑M1/91‑1 (MQ=255) aggggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAAcc < 1:4124404‑M1/6‑1 (MQ=255) cAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCA > 1:2159159‑M1/1‑91 (MQ=255) gggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCAc < 1:1918895‑M1/8‑1 (MQ=255) gggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCAc < 1:938779‑M1/8‑1 (MQ=255) aaaCCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCAC > 1:3130841‑M1/1‑91 (MQ=255) ccATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGca > 1:2291361/1‑91 (MQ=255) cATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcat > 1:761808/1‑91 (MQ=255) aTTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcatc < 1:1102063/91‑1 (MQ=255) ttACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcatca > 1:3129898/1‑91 (MQ=255) ttACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcatca < 1:1029140/91‑1 (MQ=255) aCTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATg < 1:3397939/91‑1 (MQ=255) cTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGt > 1:508599/1‑91 (MQ=255) cTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGt > 1:4074952/1‑91 (MQ=255) aGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGc < 1:122268/91‑1 (MQ=255) gTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCtt > 1:4046653/1‑91 (MQ=255) tACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTc > 1:1205760/1‑91 (MQ=255) aCAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCa < 1:2683583/91‑1 (MQ=255) aCAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCa < 1:1791683/91‑1 (MQ=255) cAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCAt > 1:2025132/1‑91 (MQ=255) aCGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGc < 1:945741/91‑1 (MQ=255) cGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGcc < 1:2527643/91‑1 (MQ=255) cGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGcc < 1:2241400/91‑1 (MQ=255) cGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGcc < 1:2907024/91‑1 (MQ=255) tACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCAt > 1:880713/1‑91 (MQ=255) tACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCAt < 1:2522278/91‑1 (MQ=255) aCTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATa < 1:1966033/91‑1 (MQ=255) cTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATAc > 1:58516/1‑91 (MQ=255) ttAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACt < 1:3938486/91‑1 (MQ=255) ttAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACt < 1:374359/91‑1 (MQ=255) tAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTa > 1:3357953/1‑91 (MQ=255) aaaTCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTaa > 1:2565186/1‑91 (MQ=255) aaaTCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTaa > 1:2634733/1‑91 (MQ=255) aTCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTaaaa > 1:1172949/1‑91 (MQ=255) tCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAAc < 1:2139662/91‑1 (MQ=255) tCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAAc > 1:145102/1‑91 (MQ=255) tCATAAACGTCGTTAAAATATCGCTACAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAAc < 1:3847514/91‑1 (MQ=255) cATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatataca < 1:2566357‑M1/91‑36 (MQ=255) aagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACa > 1:934853‑M1/48‑91 (MQ=255) gaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATg > 1:398170‑M1/46‑91 (MQ=255) aaaCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatga < 1:3977761‑M1/91‑39 (MQ=255) aaCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGAt > 1:3092662/1‑91 (MQ=255) cgtcgtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgc < 1:3273469‑M1/91‑42 (MQ=255) cgtcgtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgc < 1:424048‑M1/91‑42 (MQ=255) tcgtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgt < 1:2856235‑M1/91‑44 (MQ=255) agacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGt > 1:4093847‑M1/40‑91 (MQ=255) gtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtgg < 1:1431283‑M1/91‑46 (MQ=255) gtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtgg < 1:3655665‑M2/91‑6 (MQ=255) ttAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACTCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggt > 1:3290900‑M2/1‑85 (MQ=255) ttAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggt > 1:2257957‑M2/1‑85 (MQ=255) ttAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggt > 1:2258171‑M2/1‑85 (MQ=255) aaaTATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggttct > 1:3005243‑M2/1‑82 (MQ=255) atatCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTAt < 1:3891575/91‑1 (MQ=255) atCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTAttt < 1:3817541/91‑1 (MQ=255) tCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTg > 1:2303953/1‑91 (MQ=255) ccAAGATTATGANAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattat < 1:390513/91‑1 (MQ=255) ccAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattat > 1:3240025/1‑91 (MQ=255) ccAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattat < 1:1990950/91‑1 (MQ=255) aaGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttc < 1:3705175/91‑1 (MQ=255) aaGATTATGACAACATAACAAAGAACCACGCATCATGCATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttc > 1:3495450/1‑91 (MQ=255) gATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttctt < 1:2644459/91‑1 (MQ=255) ttATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCa < 1:1584316/91‑1 (MQ=255) tATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt > 1:3408802/1‑91 (MQ=255) tATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt > 1:1928086/1‑91 (MQ=255) tATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt > 1:130761/1‑91 (MQ=255) tGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAttt < 1:1549452/91‑1 (MQ=255) gaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTtat > 1:177151‑M1/13‑91 (MQ=255) acaacaTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTtat < 1:2819137/91‑1 (MQ=255) acaacaTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTCGTCCTATTTGATTATTCTTCATTtat > 1:1617057/1‑91 (MQ=255) caTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACa < 1:2810247/91‑1 (MQ=255) tAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACAtt > 1:3608359/1‑91 (MQ=255) aaCAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACAttt < 1:610578/91‑1 (MQ=255) aaCAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACAttt < 1:610565/91‑1 (MQ=255) aCAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTa > 1:2883111/1‑91 (MQ=255) aCAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTa > 1:2718507/1‑91 (MQ=255) aCAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTa > 1:2409380/1‑91 (MQ=255) aaaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAg > 1:3226967/1‑91 (MQ=255) aaaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAg < 1:1640983/91‑1 (MQ=255) aaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGa < 1:2027173/91‑1 (MQ=255) aaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGa > 1:1374564/1‑91 (MQ=255) aGAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctttgttatgttgtcataatcttggagcgatattt > 1:3005243‑M1/1‑9 (MQ=255) AGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGaa < 1:3362145‑M1/91‑1 (MQ=255) AGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGaa < 1:3932949‑M1/91‑1 (MQ=255) AGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGaa > 1:2454479‑M1/1‑91 (MQ=255) | GCCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAA > USA300TCH1516_ALE/2533447‑2533627 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |