| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2533545 | 83 (0.840) | 10 (0.110) | 6/142 | NT | 12.2% | intergenic (+41/+56) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC |
| ? | USA300TCH1516_ALE | = 2533585 | 70 (0.800) | intergenic (+81/+16) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC | |||||
GCCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2533447‑2533545‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaaccacgTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAAC < USA300TCH1516_ALE/2533585‑2533500 GCCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAA < 1:2467385/91‑1GCCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAA > 1:2323603/1‑91 CCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAGTATCGCTCCAAGATTATGACAACATAACAAAG > 1:3544669/1‑91 CCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAG > 1:3086609/1‑91 CCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAG > 1:2812437/1‑91 CCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAG > 1:2324496/1‑91 TATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAA < 1:2139150/91‑1 ATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAAC > 1:3428016/1‑91 TCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACC < 1:2632974/91‑1 TCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACC < 1:3694095/91‑1 TCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACC < 1:1830187/91‑1 CAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCA > 1:2161011/1‑91 CAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCA > 1:2159159/1‑91 CAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCA < 1:3783169/91‑1 AAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCAC > 1:3130841/1‑91 CATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACA < 1:2566357/91‑1 AAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGA < 1:3977761/91‑1 AACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGAT < 1:3070770/91‑1 AACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGAT < 1:3946502/91‑1 CGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGC < 1:424048/91‑1 CGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGC < 1:3273469/91‑1 TCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGT < 1:2856235/91‑1 GTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGG < 1:951755/91‑1 GTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGG < 1:876786/91‑1 GTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGG < 1:1431283/91‑1 AGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTT > 1:3005243/1‑91 ACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAA > 1:2258171/1‑91 ACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAA > 1:2258065/1‑91 ACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAA > 1:2257957/1‑91 ACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGAGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAA > 1:3290900/1‑91 CCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAAC < 1:3655665/91‑1 GCCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2533447‑2533545‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaaccacgTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAAC < USA300TCH1516_ALE/2533585‑2533500 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |