| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2533545 | 83 (0.840) | 10 (0.110) | 6/142 | NT | 12.2% | intergenic (+41/+56) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC |
| ? | USA300TCH1516_ALE | = 2533585 | 70 (0.800) | intergenic (+81/+16) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC | |||||
Only 100 of 116 total aligned reads displayed.
ACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGA > USA300TCH1516_ALE/2533495‑2533673 | aCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATa < 1:2594946/91‑1 (MQ=255)aCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATa > 1:4109901/1‑91 (MQ=255) aagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACg > 1:1423780‑M1/41‑91 (MQ=255) agacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGt > 1:4093847‑M1/40‑91 (MQ=255) gtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtgg < 1:3655665‑M2/91‑6 (MQ=255) ttAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACTCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggt > 1:3290900‑M2/1‑85 (MQ=255) ttAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggt > 1:2258171‑M2/1‑85 (MQ=255) ttAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggt > 1:2258065‑M2/1‑85 (MQ=255) ttAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggt > 1:2257957‑M2/1‑85 (MQ=255) aaaTATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggttct > 1:3005243‑M2/1‑82 (MQ=255) atatCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTAt < 1:3891575/91‑1 (MQ=255) agatCGCTCCAAGATTATGACAACATAACAAAGAACCGCGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTAt < 1:3891016/89‑1 (MQ=255) atCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTAttt < 1:3817541/91‑1 (MQ=255) tCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTg > 1:2303953/1‑91 (MQ=255) ccAAGATTATGANAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattat < 1:390513/91‑1 (MQ=255) ccAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattat > 1:3240194/1‑91 (MQ=255) ccAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattat < 1:1990950/91‑1 (MQ=255) cAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattatt < 1:3511361/91‑1 (MQ=255) aaGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttc < 1:728556/91‑1 (MQ=255) aaGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttc < 1:3705175/91‑1 (MQ=255) gATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttctt < 1:2644459/91‑1 (MQ=255) ttATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCa < 1:3652565/91‑1 (MQ=255) tATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt > 1:3408802/1‑91 (MQ=255) tATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt > 1:1928086/1‑91 (MQ=255) tATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt > 1:2158118/1‑91 (MQ=255) tATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt > 1:130761/1‑91 (MQ=255) tGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAttt > 1:1653866/1‑91 (MQ=255) tGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAttt < 1:1549452/91‑1 (MQ=255) gACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAtttc > 1:1256968/1‑90 (MQ=255) gaataatcaaatAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTtat > 1:177151‑M1/13‑91 (MQ=255) acaacaTAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTtat < 1:2819137/91‑1 (MQ=255) acaacaTAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTCGTCCTATTTGATTATTCTTCATTtat > 1:1617057/1‑91 (MQ=255) caTAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACa < 1:2810290/91‑1 (MQ=255) caTAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACa < 1:2810247/91‑1 (MQ=255) aatcaaatAGAACCACGTATCATGTTTTAGTATGGCTTCATCGTCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTtat > 1:2352157‑M1/9‑91 (MQ=255) tAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACAtt > 1:3608359/1‑91 (MQ=255) aaCAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACAttt < 1:610578/91‑1 (MQ=255) aaCAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACAttt < 1:610565/91‑1 (MQ=255) aCAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTa > 1:2883111/1‑91 (MQ=255) aCAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTa > 1:2718507/1‑91 (MQ=255) aCAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTa > 1:1179298/1‑91 (MQ=255) aCAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTa > 1:2409380/1‑91 (MQ=255) aaaGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAg > 1:3226967/1‑91 (MQ=255) aaaGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAg < 1:1640983/91‑1 (MQ=255) AGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGaa < 1:3362145‑M1/91‑1 (MQ=255) AGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGaa > 1:2454479‑M1/1‑91 (MQ=255) AACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAAc > 1:3801821‑M1/1‑91 (MQ=255) AACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAAc < 1:2720305‑M1/91‑1 (MQ=255) ccACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgttatgttgtcataatcttggagcgatattttaac < 1:1431283‑M2/91‑47 (MQ=255) ccACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgttatgttgtcataatcttggagcgatattttaac < 1:876786‑M2/91‑47 (MQ=255) ccACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgttatgttgtcataatcttggagcgatattttaac < 1:951755‑M2/91‑47 (MQ=255) CCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGt < 1:3197801‑M1/91‑1 (MQ=255) CCACGCATCATGA‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGt < 1:3197786‑M1/91‑1 (MQ=255) ACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCt > 1:1354238‑M1/1‑91 (MQ=255) ACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCt > 1:1353801‑M1/1‑91 (MQ=255) CGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCtt > 1:1849876‑M1/1‑91 (MQ=255) CGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCtt > 1:4045940‑M1/1‑91 (MQ=255) CGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCtt > 1:2132235‑M1/1‑91 (MQ=255) gCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgttatgttgtcataatcttggagcgatattttaacgacg < 1:3273469‑M2/91‑51 (MQ=255) gCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgttatgttgtcataatcttggagcgatattttaacgacg < 1:424048‑M2/91‑51 (MQ=255) atcatGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgttatgttgtcataatcttggagcgatattttaacgacgtt < 1:3070770‑M2/91‑53 (MQ=255) atcatGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgttatgttgtcataatcttggagcgatattttaacgacgtt < 1:3946502‑M2/91‑53 (MQ=255) tcatGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgttatgttgtcataatcttggagcgatattttaacgacgttt < 1:3977761‑M2/91‑54 (MQ=255) tcatGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAtt < 1:2762234/91‑1 (MQ=255) atGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttct > 1:2930188/1‑91 (MQ=255) atGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttct > 1:2928424/1‑91 (MQ=255) atGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttct > 1:2928079/1‑91 (MQ=255) atGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttct > 1:1829780/1‑91 (MQ=255) atGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttct < 1:149078/91‑1 (MQ=255) tGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgttatgttgtcataatcttggagcgatattttaacgacgtttatg < 1:2566357‑M2/91‑57 (MQ=255) tGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttctt > 1:2492945/1‑91 (MQ=255) tGT‑‑‑A‑TAAGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttctt > 1:693876/1‑91 (MQ=255) gT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttcttc > 1:3876003/1‑91 (MQ=255) t‑‑‑a‑taTGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATtcttct > 1:862568/1‑91 (MQ=255) atGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGtt < 1:2451038/91‑1 (MQ=255) tGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGttt < 1:2928532/91‑1 (MQ=255) ggCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGtttt < 1:2565986/91‑1 (MQ=255) ggCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGtttt < 1:3795380/91‑1 (MQ=255) ttCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCgg < 1:811203/91‑1 (MQ=255) tCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGa > 1:2435344/1‑91 (MQ=255) tgaagCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGAc > 1:1522169/5‑91 (MQ=255) aTCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACg < 1:256208/91‑1 (MQ=255) tCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGa < 1:918288/91‑1 (MQ=255) tCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGa < 1:918254/91‑1 (MQ=255) tCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGa > 1:2153927/1‑91 (MQ=255) gCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGAtt > 1:1649963/1‑91 (MQ=255) gCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGAtt > 1:1888923/1‑91 (MQ=255) aTACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGaa < 1:1660658/91‑1 (MQ=255) cTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACAt < 1:3726278/91‑1 (MQ=255) cTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACAt > 1:2276253/1‑91 (MQ=255) cTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACAt < 1:132019/91‑1 (MQ=255) cTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACAt < 1:3033774/91‑1 (MQ=255) tAAAACATGATACGTGGTTCTATTTCAATATTCTTCATTTATAACATTTAAGAAACGTATTAATTCTTCTGTTTTCGGACGATTGAACAtc > 1:1837985/1‑91 (MQ=255) aaaaCATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACAtct > 1:3317644/1‑91 (MQ=255) aaaCATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACAtctc < 1:486630/91‑1 (MQ=255) aaCATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATctct > 1:3032449/1‑91 (MQ=255) aCATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCtctt > 1:1063164/1‑91 (MQ=255) tGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTg > 1:920873/1‑91 (MQ=255) gATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTgg < 1:3124717/91‑1 (MQ=255) aTACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGa > 1:1406307/1‑91 (MQ=255) | ACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGA > USA300TCH1516_ALE/2533495‑2533673 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |