| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2533545 | 83 (0.840) | 10 (0.110) | 6/142 | NT | 12.2% | intergenic (+41/+56) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC |
| ? | USA300TCH1516_ALE | = 2533585 | 70 (0.800) | intergenic (+81/+16) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC | |||||
Only 100 of 139 total aligned reads displayed.
CCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTA > USA300TCH1516_ALE/2533457‑2533635 | ccATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGca > 1:2291361/1‑91 (MQ=255) cATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcat > 1:761808/1‑91 (MQ=255) aTTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcatc < 1:1102063/91‑1 (MQ=255) ttACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcatca < 1:1029140/91‑1 (MQ=255) ttACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcatca > 1:3129898/1‑91 (MQ=255) cTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGt > 1:3366284/1‑91 (MQ=255) cTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGt > 1:4074952/1‑91 (MQ=255) tataAGGTAAAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGt‑‑‑a‑ta > 1:2091761/1‑91 (MQ=255) ataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑a‑tat < 1:2637368/91‑1 (MQ=255) ataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑a‑tat > 1:1918908/1‑91 (MQ=255) aGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGc < 1:122268/91‑1 (MQ=255) gTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCtt > 1:4046653/1‑91 (MQ=255) tACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTc > 1:591588/1‑91 (MQ=255) tACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTc > 1:1205760/1‑91 (MQ=255) aCAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCa < 1:2683583/91‑1 (MQ=255) aCAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCa < 1:1791380/91‑1 (MQ=255) cAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCAt > 1:2025132/1‑91 (MQ=255) aaCGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCg > 1:1997621/1‑91 (MQ=255) aCGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGc < 1:945741/91‑1 (MQ=255) cGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGcc < 1:2527643/91‑1 (MQ=255) cGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGcc < 1:2907024/91‑1 (MQ=255) cGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGcc < 1:2241400/91‑1 (MQ=255) tACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCAt > 1:880713/1‑91 (MQ=255) tACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCAt > 1:3694958/1‑91 (MQ=255) aCTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCaaa > 1:269603/1‑89 (MQ=255) aCTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATa < 1:1486609/91‑1 (MQ=255) cTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATAc > 1:58516/1‑91 (MQ=255) ttAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACt < 1:374359/91‑1 (MQ=255) ttAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACt < 1:3938486/91‑1 (MQ=255) aaaTCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTaa > 1:2634733/1‑91 (MQ=255) aaaTCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTaa > 1:2565186/1‑91 (MQ=255) aTCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTaaaa > 1:1172949/1‑91 (MQ=255) tCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAAc < 1:247309/91‑1 (MQ=255) tCATAAACGTCGTTAAAATATCGCTACAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAAc < 1:3847514/91‑1 (MQ=255) cATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatataca < 1:2566357‑M1/91‑36 (MQ=255) aagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACa > 1:934853‑M1/48‑91 (MQ=255) aTAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACAt < 1:3915579/91‑1 (MQ=255) aTAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACAt < 1:1588590/91‑1 (MQ=255) aaaCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatga < 1:3977761‑M1/91‑39 (MQ=255) aaCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatgat < 1:3070770‑M1/91‑40 (MQ=255) aaCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatgat < 1:3946502‑M1/91‑40 (MQ=255) aCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATa > 1:4109901/1‑91 (MQ=255) aagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACg > 1:1423780‑M1/41‑91 (MQ=255) tcgtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgt < 1:2856235‑M1/91‑44 (MQ=255) agacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGt > 1:4093847‑M1/40‑91 (MQ=255) agacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGt > 1:2294483‑M1/40‑91 (MQ=255) gtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtgg < 1:951755‑M1/91‑46 (MQ=255) gtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtgg < 1:1431283‑M1/91‑46 (MQ=255) ttAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACTCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggt > 1:3290900‑M2/1‑85 (MQ=255) ttAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggt > 1:2258065‑M2/1‑85 (MQ=255) ttAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggt > 1:2258171‑M2/1‑85 (MQ=255) aaaTATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggttct > 1:3005243‑M2/1‑82 (MQ=255) atatCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTAt < 1:3891575/91‑1 (MQ=255) atCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTAttt < 1:3817541/91‑1 (MQ=255) ccAAGATTATGANAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattat < 1:390513/91‑1 (MQ=255) ccAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattat < 1:1990950/91‑1 (MQ=255) ccAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattat > 1:3240025/1‑91 (MQ=255) ccAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattat > 1:3240194/1‑91 (MQ=255) cAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattatt < 1:3511361/91‑1 (MQ=255) aaGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttc < 1:3705175/91‑1 (MQ=255) aaGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttc < 1:728556/91‑1 (MQ=255) aaGATTATGACAACATAACAAAGAACCACGCATCATGC‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttc > 1:3495450/1‑91 (MQ=255) aTTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttcttc > 1:479478/1‑91 (MQ=255) ttATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCa < 1:3652565/91‑1 (MQ=255) tATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt > 1:2158118/1‑91 (MQ=255) tATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt > 1:3408802/1‑91 (MQ=255) tATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt > 1:1928086/1‑91 (MQ=255) tGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAttt < 1:1549452/91‑1 (MQ=255) gACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAtttc > 1:1256968/1‑90 (MQ=255) gaataatcaaatAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTtat > 1:177151‑M1/13‑91 (MQ=255) acaacaTAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTtat < 1:2819137/91‑1 (MQ=255) acaacaTAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTCGTCCTATTTGATTATTCTTCATTtat > 1:1617057/1‑91 (MQ=255) caTAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACa < 1:2810247/91‑1 (MQ=255) aatcaaatAGAACCACGTATCATGTTTTAGTATGGCTTCATCGTCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTtat > 1:2352157‑M1/9‑91 (MQ=255) aaCAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACAttt < 1:610565/91‑1 (MQ=255) aCAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTa > 1:2883111/1‑91 (MQ=255) aCAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTa > 1:2409380/1‑91 (MQ=255) aaaGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAg > 1:3226967/1‑91 (MQ=255) aaaGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAg < 1:1640983/91‑1 (MQ=255) aGAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctttgttatgttgtcataatcttggagcgatattt > 1:3005243‑M1/1‑9 (MQ=255) AGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGaa < 1:3362145‑M1/91‑1 (MQ=255) AGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGaa > 1:2454479‑M1/1‑91 (MQ=255) GAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGaaa < 1:2663183‑M1/91‑1 (MQ=255) AACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAAc < 1:2720305‑M1/91‑1 (MQ=255) aCCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctttgttatgttgtcataatcttggagcgatattttaa > 1:2258065‑M1/1‑6 (MQ=255) aCCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctttgttatgttgtcataatcttggagcgatattttaa > 1:2257957‑M1/1‑6 (MQ=255) aCCACGtatcatgttttagtatggcgatgaagccatatacatgatgagtggttctttgttatgttgtcataatcttggagcgatattttaa > 1:3290900‑M1/1‑6 (MQ=255) ccACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctttgttatgttgtcataatcttggagcgatattttaac < 1:3655665‑M1/91‑87 (MQ=255) ccACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgttatgttgtcataatcttggagcgatattttaac < 1:1431283‑M2/91‑47 (MQ=255) ccACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgttatgttgtcataatcttggagcgatattttaac < 1:876786‑M2/91‑47 (MQ=255) CCACGCATCATGA‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGt < 1:3197786‑M1/91‑1 (MQ=255) aCGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgttatgttgtcataatcttggagcgatattttaacga < 1:2856235‑M2/91‑49 (MQ=255) ACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCt > 1:1354238‑M1/1‑91 (MQ=255) ACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCt > 1:1353801‑M1/1‑91 (MQ=255) ACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCt < 1:2492630‑M1/91‑1 (MQ=255) CGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCtt > 1:4045940‑M1/1‑91 (MQ=255) CGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCtt > 1:1849876‑M1/1‑91 (MQ=255) CGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCtt > 1:2132235‑M1/1‑91 (MQ=255) gCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgttatgttgtcataatcttggagcgatattttaacgacg < 1:424048‑M2/91‑51 (MQ=255) gCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgttatgttgtcataatcttggagcgatattttaacgacg < 1:3273469‑M2/91‑51 (MQ=255) | CCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGT‑‑‑A‑TATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTA > USA300TCH1516_ALE/2533457‑2533635 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |