| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2534553 | 72 (0.730) | 5 (0.050) | 4/150 | NT | 6.9% | coding (505/729 nt) | tcyB | L‑cystine transport system permease protein TcyB |
| ? | USA300TCH1516_ALE | = 2534570 | 67 (0.730) | coding (488/729 nt) | tcyB | L‑cystine transport system permease protein TcyB | |||||
ACTTCTTGAGCTTTTCTAAACATTTCAGCCACTAAAATAAATCCTAATAATGATGTATCTTTGATTAAACTTAAAAATGTATTACCTAGTGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2534459‑2534553‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggCAATTCGAGTGTCGATTCCTGCACTAGGTAATACATTTTTAAGTTTAATCAAAGATACATCATTATTAGGATTTATTTTAGTGGCTG < USA300TCH1516_ALE/2534570‑2534484 ACTTCTTGAGCTTTTCTAAACATTTCAGCCACTAAAATAAATCCTAATAATGATGTATCTTTGATTAAACTTAAAAATGTATTACCTAGTG < 1:759939/91‑1 CTTCTTGAGCTTTTCTAAACATTTCAGCCACTAAAATAAATCCTAATAATGATGTATCTTTGATTAAACTTAAAAATGTATTACCTAGTGC < 1:1153679/91‑1 CTTCTTGAGCTTTTCTAAACATTTCAGCCACTAAAATAAATCCTAATAATGATGTATCTTTGATTAAACTTAAAAATGTATTACCTAGTGC < 1:1153874/91‑1 TCTTGAGCTTTTCTAAACATTTCAGCCACTAAAATAAATCCTAATAATGATGTATCTTTGATTAAACTTAAAAATGTATTACCTAGTGCAG < 1:1338597/91‑1 CTTGAGCTTTTCTAAACATTTCAGCCACTAAAATAAATCCTAATAATGATGTATCTTTGATTAAACTTAAAAATGTATTACCTAGTGCAGG > 1:2949869/1‑91 TTCAGCCACTAAAATAAATCCTAATAATGATGTATCTTTGATTAAACTTAAAAATGTATTACCTAGTGCAGGCAATTCGAGTGTCGATTCC < 1:3087570/91‑1 TTCAGCCACTAAAATAAATCCTAATAATGATGTATCTTTGATTAAACTTAAAAATGTATTACCTAGTGCAGGCAATTCGAGTGTCGATTCC < 1:3087984/91‑1 TCAGCCACTAAAATAAATCCTAATAATGATGTATCTTTGATTAAACTTAAAAATGTATTACCTAGTGCAGGCAATTCGAGTGTCGATTCCT < 1:1737230/91‑1 CACTAAAATAAATCCTAATAATGATGTATCTTTGATTAAACTTAAAAATGTATTACCTAGTGCAGGCAATTCGAGTGTCGATTCCTGCACT < 1:1400273/91‑1 TAAATCCTAATAATGATGTATCTTTGATTAAACTTAAAAATGTATTACCTAGTGCAGGCAATTCGAGTGTCGATTCCTGCACTAGGTAATA < 1:3843971/91‑1 GCAGGCAATTCGAGTGTCGATTCCTGCACTAGGTAATACATTTTTAAGTTTAATCAAAGATACATCATTATTAGGATTTATTTTAGTGGCT < 1:1168582/91‑1 CAGGCAATTCGAGTGTCGATTCCTGCACTAGGTAATACATTTTTAAGTTTAATCAAAGATACATCATTATTAGGATTTATTTTAGTGGCTG < 1:2003103/91‑1 CAGGCAATTCGAGTGTCGATTCCTGCACTAGGTAATACATTTTTAAGTTTAATCAAAGATACATCATTATTAGGATTTATTTTAGTGGCTG > 1:2251961/1‑91 CAGGCAATTCGAGTGTCGATTCCTGCACTAGGTAATACATTTTTAAGTTTAATCAAAGATACATCATTATTAGGATTTATTTTAGTGGCTG > 1:2540437/1‑91 CAGGCAATTCGAGTGTCGATTCCTGCACTAGGTAATACATTTTTAAGTTTAATCAAAGATACATCATTATTAGGATTTATTTTAGTGGCTG < 1:3371398/91‑1 ACTTCTTGAGCTTTTCTAAACATTTCAGCCACTAAAATAAATCCTAATAATGATGTATCTTTGATTAAACTTAAAAATGTATTACCTAGTGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2534459‑2534553‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggCAATTCGAGTGTCGATTCCTGCACTAGGTAATACATTTTTAAGTTTAATCAAAGATACATCATTATTAGGATTTATTTTAGTGGCTG < USA300TCH1516_ALE/2534570‑2534484 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |