| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2573677 = | 93 (0.950) | 13 (0.150) | 8/138 | NT | 14.7% | intergenic (‑203/+91) | norB_5/opuCD | Quinolone resistance protein NorB/Carnitine transport permease protein OpuCD |
| ? | USA300TCH1516_ALE | 2573715 = | 71 (0.840) | intergenic (‑241/+53) | norB_5/opuCD | Quinolone resistance protein NorB/Carnitine transport permease protein OpuCD | |||||
TAATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2573777‑2573677‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATTG > USA300TCH1516_ALE/2573715‑2573803 TAATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTT > 1:2860253/1‑91TAATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTT > 1:4076295/1‑91 TATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGA < 1:1323372/91‑1 TATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGA < 1:9159/91‑1 TGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGT < 1:1638023/91‑1 TGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGT < 1:1638033/91‑1 GTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTA > 1:3173765/1‑91 GTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTA > 1:2519114/1‑91 AATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGC < 1:617837/91‑1 TAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCT > 1:4100233/1‑91 TTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCC‑‑‑‑TTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACAT > 1:2694083/1‑91 TAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCC‑‑‑‑TTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTC > 1:881925/1‑91 AGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTA > 1:418182/1‑91 AGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTA > 1:416923/1‑91 GGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTAT > 1:1494375/1‑91 ACTCAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACA > 1:1189100/1‑91 CAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATAT > 1:1288955/1‑91 CAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATAT > 1:3557084/1‑91 CAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATAT > 1:2733037/1‑91 CAAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATAT > 1:2732913/1‑91 AAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATT > 1:1625208/1‑91 AAGGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATT > 1:1464746/1‑91 GGAGCTCAAATAATCTTTGAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAA > 1:2906850/1‑91 GAGTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGAT > 1:3454591/1‑91 GTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTA < 1:1410296/91‑1 GTAGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTA < 1:1372823/91‑1 AGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGA > 1:3990901/1‑91 AGCCTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGA > 1:4048991/1‑91 CCTCATCTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATT > 1:3221423/1‑91 CTCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATTG < 1:3461289/91‑1 CTCACTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATTG < 1:3461473/91‑1 TAATATGTAATAGTAGAAGATGTTTATAATTTAGCGATTTCGTTTCATGATTTATAAAAAATGAGGCTACTCAAGGAGCTCAAATAATCTTTGAGTAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2573777‑2573677‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgagtagcctCATTTTTTATAAATCATGAAACGAAATCGCTAAATTATAAACATCTTCTACTATTACATATTAATACTTTGCGGCCGATGATTAGATTG > USA300TCH1516_ALE/2573715‑2573803 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |