| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2580412 = | 107 (1.090) | 11 (0.130) | 7/142 | NT | 11.5% | intergenic (+47/‑561) | yveA/pnbA | Aspartate‑proton symporter/Para‑nitrobenzyl esterase |
| ? | USA300TCH1516_ALE | 2580445 = | 74 (0.850) | intergenic (+80/‑528) | yveA/pnbA | Aspartate‑proton symporter/Para‑nitrobenzyl esterase | |||||
ATTTATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2580510‑2580412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggttggttTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAGTT > USA300TCH1516_ALE/2580445‑2580534 ATTTATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAAT > 1:1217465/1‑91ATTTATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAAT > 1:756077/1‑91 TTATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGG > 1:3053768/1‑91 TTATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGG < 1:1662364/91‑1 TATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGT < 1:1840528/91‑1 ATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTT < 1:3752819/91‑1 ATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTT < 1:3997978/91‑1 GTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGG < 1:1516137/91‑1 GTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGG < 1:1322478/91‑1 GTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGG < 1:372756/91‑1 TCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGCTGTTGAAATCAATGGTTGGT > 1:1327703/1‑91 TCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGGT > 1:35108/1‑91 CCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGGTT < 1:1562402/91‑1 CCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGGTT < 1:3438649/91‑1 CCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGGTT > 1:394182/1‑91 CCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGGTT > 1:1024998/1‑91 GTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAGGAGGTTGAAATCAATGGTTTGTTTCTTATTTTGAAAATCGGat > 1:2652648/1‑89 AAACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGG > 1:1143048/1‑91 AACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGG > 1:2164630/1‑91 AACCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGG > 1:3827096/1‑91 CCAACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGAC > 1:2793260/1‑91 AACCAAGATGTTGAAATCAATGGTTGGTTTTTTCTTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACAT > 1:4067870/1‑91 AACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACAT > 1:969227/1‑91 ACCAAGATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATA > 1:1597389/1‑91 GATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCA > 1:2758127/1‑91 GATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCA > 1:2759256/1‑91 GATGTTGAAATCAATGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCA > 1:2548585/1‑91 TGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCT < 1:3355158/91‑1 TGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCT > 1:3461419/1‑91 GGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTA > 1:3032454/1‑91 GTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTAC > 1:773433/1‑91 TGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGA > 1:486744/1‑91 TGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGA < 1:560379/91‑1 GTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAG < 1:3072314/91‑1 GTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAG < 1:66566/91‑1 GTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAG < 1:1859777/91‑1 GTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAG < 1:1039926/91‑1 TTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAGT > 1:674058/1‑91 TTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAGTT < 1:3663856/91‑1 TTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAGTT < 1:2748225/91‑1 TTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAGTT < 1:2210863/91‑1 ATTTATGTCCCAGCCTGATCATCATCTTGTTATGTTAGTTATTTATAACCGATTTTCAAAATAAAAAACCAACCAAGATGTTGAAATCAATGGTTGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2580510‑2580412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggttggttTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAGTT > USA300TCH1516_ALE/2580445‑2580534 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |