BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2580412 =	107 (1.090)	11 (0.130)	7/142	NT	11.5%	intergenic (+47/‑561)	yveA/pnbA	Aspartate‑proton symporter/Para‑nitrobenzyl esterase
*	?	USA300TCH1516_ALE	2580445 =	74 (0.850)	11 (0.130)	7/142	NT	11.5%	intergenic (+80/‑528)	yveA/pnbA	Aspartate‑proton symporter/Para‑nitrobenzyl esterase

Only 100 of 133 total aligned reads displayed.

CATCTCATTAAATATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAGTTA  >  USA300TCH1516_ALE/2580355‑2580535

ccagcctgatcatcatcttgttatgttagttatttataaccgattttcaaaataaaaAACCAACCATTGATTTCAACATCTTGGTTGGttt                                                                                            >  1:1143048‑M1/58‑91 (MQ=255)

cATCTCATTAAATATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGttt                                                                                            <  1:2963235/91‑1 (MQ=255)

cATCTCATTAAATATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGttt                                                                                            >  1:3825615/1‑91 (MQ=255)

cATCTCATTAAATATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGttt                                                                                            >  1:1968145/1‑91 (MQ=255)

cATCTCATTAAATATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGttt                                                                                            >  1:3888494/1‑91 (MQ=255)

 aTCTCATTAAATATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGtttt                                                                                           <  1:3827782/91‑1 (MQ=255)

 aTCTCATTAAATATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGtttt                                                                                           >  1:3605406/1‑91 (MQ=255)

 aTCTCATTAAATATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGtttt                                                                                           <  1:3238639/91‑1 (MQ=255)

 aTCTCATTAAATATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGtttt                                                                                           >  1:2650196/1‑91 (MQ=255)

   ctcATTAAATATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGtttttt                                                                                         <  1:1696808/91‑1 (MQ=255)

    tcATTAAATATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTa                                                                                        >  1:1257522/1‑91 (MQ=255)

     cATTAAATATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTAt                                                                                       <  1:1988898/91‑1 (MQ=255)

     cATTAAATATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTAt                                                                                       >  1:1909274/1‑91 (MQ=255)

      aTTAAATATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTAtt                                                                                      <  1:766963/91‑1 (MQ=255)

       ttAAATATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTAttt                                                                                     <  1:304240/91‑1 (MQ=255)

       ttAAATATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTAttt                                                                                     <  1:1847766/91‑1 (MQ=255)

       ttAAATATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTAttt                                                                                     <  1:303249/91‑1 (MQ=255)

        tAAATATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTAtttt                                                                                    <  1:2176627/91‑1 (MQ=255)

        tAAATATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTAtttt                                                                                    <  1:2395134/91‑1 (MQ=255)

        tAAATATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTAtttt                                                                                    <  1:3951995/91‑1 (MQ=255)

         aaaTATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTg                                                                                   <  1:1424505/91‑1 (MQ=255)

         aaaTATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTg                                                                                   <  1:1554745/91‑1 (MQ=255)

          aaTATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGa                                                                                  <  1:1058811/91‑1 (MQ=255)

           atatTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGaa                                                                                 >  1:296810/1‑91 (MQ=255)

             atTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGaaaa                                                                               >  1:2343763/1‑91 (MQ=255)

             atTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGaaaa                                                                               >  1:1005573/1‑91 (MQ=255)

             atTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGaaaa                                                                               >  1:2343557/1‑91 (MQ=255)

               tttAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATc                                                                             >  1:1066838/1‑91 (MQ=255)

                ttAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCg                                                                            <  1:3065324/91‑1 (MQ=255)

                ttAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCg                                                                            >  1:4000091/1‑91 (MQ=255)

                   gttatgttagttatttataaccgattttcaaaataaaaaaccaaccaggaggttgaaatcaatggtttgttTCTTATTTTGAAAAtcggat                                                                         >  1:2652648‑M2/72‑89 (MQ=255)

                   aaaTACAGTGCCATATATGATTTCAACACACCCACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGtt                                                                         >  1:3430640/1‑91 (MQ=255)

                      tACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTtata                                                                      <  1:3510623/91‑1 (MQ=255)

                       aCAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTataa                                                                     >  1:3707625/1‑91 (MQ=255)

                          gTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTataaata                                                                  >  1:3606650/1‑91 (MQ=255)

                          gTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTataaata                                                                  <  1:3364432/91‑1 (MQ=255)

                          gTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTataaata                                                                  >  1:2587725/1‑91 (MQ=255)

                          gTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTataaata                                                                  <  1:400834/91‑1 (MQ=255)

                              cATATCTGATTTCAACACACACACACTAACCAACCATTGCTTTCAACATCTTGCTTGGTTTTTTATTTTGAAAATCGGTTATAAAtaacta                                                              <  1:3857966/91‑1 (MQ=255)

                              cATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAAtaacta                                                              >  1:2889297/1‑91 (MQ=255)

                               atatatGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAAtaactaa                                                             >  1:992037/1‑91 (MQ=255)

                                tatatGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAAtaactaac                                                            <  1:3344317/91‑1 (MQ=255)

                                tatatGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAAtaactaac                                                            <  1:1384176/91‑1 (MQ=255)

                                tatatGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAAtaactaac                                                            <  1:1384190/91‑1 (MQ=255)

                                   atGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACtaacata                                                         <  1:58442/91‑1 (MQ=255)

                                    tGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACtaacataa                                                        >  1:3530461/1‑91 (MQ=255)

                                     gATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACtaacataac                                                       >  1:1933390/1‑91 (MQ=255)

                                      aTTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACtaacataaca                                                      >  1:1029912/1‑91 (MQ=255)

                                         tCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAga                                                   <  1:2763881/91‑1 (MQ=255)

                                          cAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAgat                                                  >  1:955100/1‑91 (MQ=255)

                                           aaCACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAgatg                                                 >  1:1342661/1‑91 (MQ=255)

                                            acacacacacATTAACCAACCATTGATTTCAACATCTTGGTAGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAgatga                                                >  1:3597723/1‑91 (MQ=255)

                                             cacacacacaTTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAgatgat                                               <  1:1918200/91‑1 (MQ=255)

                                              acacacacaTTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAgatgatg                                              >  1:434701/1‑91 (MQ=255)

                                              acacacacaTTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAgatgatg                                              <  1:1873238/91‑1 (MQ=255)

                                               cacacacaTTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAgatgatga                                             >  1:268840/1‑91 (MQ=255)

                                               cacacacaTTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAgatgatga                                             >  1:1686622/1‑91 (MQ=255)

                                                acacacaTTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAgatgatgat                                            <  1:3862988/91‑1 (MQ=255)

                                                acacacaTTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAgatgatgat                                            <  1:1034840/91‑1 (MQ=255)

                                                    acaTTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAgg                                        <  1:442388/91‑1 (MQ=255)

                                                     caTTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGc                                       <  1:1813174/91‑1 (MQ=255)

                                                      aTTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCt                                      <  1:3161261/91‑1 (MQ=255)

                                                        tAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTgg                                    <  1:2982088/91‑1 (MQ=255)

                                                        tAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTgg                                    <  1:3875371/91‑1 (MQ=255)

                                                        tAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTgg                                    <  1:3273052/91‑1 (MQ=255)

                                                         aaccaaccaagatgttgaaatcaatggttggttTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTggg                                   >  1:3827096‑M2/34‑91 (MQ=255)

                                                         aaccaaccaagatgttgaaatcaatggttggttTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTggg                                   >  1:2164630‑M2/34‑91 (MQ=255)

                                                         AACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTggg                                   >  1:394182‑M1/1‑91 (MQ=255)

                                                         AACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTggg                                   >  1:1024998‑M1/1‑91 (MQ=255)

                                                         AACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTggg                                   <  1:3438649‑M1/91‑1 (MQ=255)

                                                          ACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGa                                  >  1:35108‑M1/1‑91 (MQ=255)

                                                          ACCAACCATTGATTTCAACAGCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGa                                  >  1:1327703‑M1/1‑91 (MQ=255)

                                                           ccaaccaagatgttgaaatcaatggttggttTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGAc                                 >  1:2793260‑M2/32‑91 (MQ=255)

                                                           CCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGAc                                 <  1:1322478‑M1/91‑1 (MQ=255)

                                                           CCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGAc                                 <  1:372756‑M1/91‑1 (MQ=255)

                                                           CCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGAc                                 <  1:1516137‑M1/91‑1 (MQ=255)

                                                             aaccaagatgttgaaatcaatggttggttTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACAt                               >  1:969227‑M2/30‑91 (MQ=255)

                                                             AACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACAt                               <  1:3997978‑M1/91‑1 (MQ=255)

                                                              accaagatgttgaaatcaatggttggttTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATa                              >  1:1597389‑M2/29‑91 (MQ=255)

                                                               CCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATaa                             <  1:1662364‑M1/91‑1 (MQ=255)

                                                                 ATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAAt                           >  1:1217465‑M1/1‑91 (MQ=255)

                                                                 ATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAAt                           >  1:756077‑M1/1‑91 (MQ=255)

                                                                   gatgttgaaatcaatggttggttTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCa                         >  1:2758127‑M2/24‑91 (MQ=255)

                                                                   gatgttgaaatcaatggttggttTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCa                         >  1:2759256‑M2/24‑91 (MQ=255)

                                                                   gatgttgaaatcaatggttggttTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCa                         >  1:2548585‑M2/24‑91 (MQ=255)

                                                                     aTTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAAt                       >  1:1167892/1‑91 (MQ=255)

                                                                           aCATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTa                 <  1:2717175/91‑1 (MQ=255)

                                                                            cATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTAt                >  1:1383227/1‑91 (MQ=255)

                                                                             aTCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATg               <  1:2094424/91‑1 (MQ=255)

                                                                              tCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGc              <  1:1623018/91‑1 (MQ=255)

                                                                              tCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGc              <  1:613851/91‑1 (MQ=255)

                                                                                  ggttggttTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTa          >  1:3032454‑M2/9‑91 (MQ=255)

                                                                                     tggttTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGa       >  1:486744‑M2/6‑91 (MQ=255)

                                                                                       gttTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAg     <  1:66566‑M2/88‑1 (MQ=255)

                                                                                       gttTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAg     <  1:1859777‑M2/88‑1 (MQ=255)

                                                                                       gttTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAg     <  1:3072314‑M2/88‑1 (MQ=255)

                                                                                        ttTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAGt    >  1:674058‑M2/3‑91 (MQ=255)

                                                                                         tTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAGtt   <  1:3663856‑M2/90‑1 (MQ=255)

                                                                                         tTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAGtt   <  1:2748225‑M2/90‑1 (MQ=255)

                                                                                         tTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAGtt   <  1:2210863‑M2/90‑1 (MQ=255)

CATCTCATTAAATATTTTAAAATACAGTGCCATATATGATTTCAACACACACACATTAACCAACCATTGATTTCAACATCTTGGTTGGTTTTTTATTTTGAAAATCGGTTATAAATAACTAACATAACAAGATGATGATCAGGCTGGGACATAAATCAATGTTCTATGCTCTACGAAGTTA  >  USA300TCH1516_ALE/2580355‑2580535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.