| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2580666 = | 87 (0.880) | 8 (0.090) | 4/140 | NT | 10.4% | intergenic (+301/‑307) | yveA/pnbA | Aspartate‑proton symporter/Para‑nitrobenzyl esterase |
| ? | USA300TCH1516_ALE | 2580701 = | 62 (0.720) | intergenic (+336/‑272) | yveA/pnbA | Aspartate‑proton symporter/Para‑nitrobenzyl esterase | |||||
TCTTATACATTAGCCACAGCTAATGTGTACTTAAAAATATGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2580765‑2580666‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtatttcttATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTGGCTAATGTATAAGAACCACTACATAATAAATCATTTGTG > USA300TCH1516_ALE/2580701‑2580790 TCTTATACATTAGCCACAGCTAATGTGTACTTAAAAATATGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAA < 1:1601648/91‑1 CTTATACATTAGCCACAGCTAATGTGTACTTAAAAATATGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAG < 1:3547120/91‑1 TTATACATTAGCCACAGCTAATGTGTACTTAAAAATATGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGT > 1:557008/1‑91 ATACATTAGCCACAGCTAATGTGTACTTAAAAATATGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTAT > 1:2130717/1‑91 ATACATTAGCCACAGCTAATGTGTACTTAAAAATATGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTAT > 1:249460/1‑91 ACATTAGCCACAGCTAATGTGTACTTAAAAATATGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTT > 1:3945308/1‑91 CATTAGCCACAGCTAATGTGTACTTAAAAATATGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTC > 1:1352842/1‑91 CATTAGCCACAGCTAATGTGTACTTAAAAATATGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTC < 1:484243/91‑1 ATAAGAAATACTAATTTCTAAAGAAAAAGTATTTCTTATGCATGAGTTTTACTCATGTATTCCTATTTTTAAATACACATTAGCTGTGGCT > 1:724170/1‑91 AAGAAATACTAATTTCTATAGAAAAAGTATTACTTATGCATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGTGGCTAA > 1:2604518/1‑91 AAGAAATACTAATTTCTATAGAAAAAGTATTACTTATGCATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGTGGCTAA > 1:2604433/1‑91 AGAAATACTAATTTCTATAGAAAAAGTATTTCTTATGCATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGTGGCTAAT > 1:3799383/1‑91 AATACTAATTTCTATAGAAAAAGTATTTCTTATGCATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGCTGTGGCTAATGTt > 1:1326264/1‑90 ACTAATTTCTATAGAAAAAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTGGCTAATGTATAA > 1:1017372/1‑91 ATAGAAAAAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTGGCTAATGTATAAGAACCACTAC > 1:3828345/1‑91 ATAGAAAAAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTGGCTAATGTATAAGAACCACTAC > 1:458056/1‑91 AGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTGGCTAATGTATAAGAACCACTACATAATAAA > 1:1404544/1‑91 AGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTGGCTAATGTATAAGAACCACTACATAATAAA > 1:900109/1‑91 AGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTGGCTAATGTATAAGAACCACTACATAATAAA > 1:900349/1‑91 GTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTGGCTAATGTATAAGAACCACTACATAATAAAT < 1:1869302/91‑1 TTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTGGCTAATGTATAAGAACCACTACATAATAAATCAT > 1:2341325/1‑91 CTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTGGCTAATGTATAAGAACCACTACATAATAAATCATTTG < 1:1400234/91‑1 CTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTGGCTAATGTATAAGAACCACTACATAATAAATCATTTG < 1:941754/91‑1 TATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTGGCTAATGTATAAGAACCACTACATAATAAATCATTTGTG > 1:1757398/1‑91 TATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTGGCTAATGTATAAGAACCACTACATAATAAATCATTTGTG < 1:148038/91‑1 TCTTATACATTAGCCACAGCTAATGTGTACTTAAAAATATGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2580765‑2580666‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtatttcttATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTGGCTAATGTATAAGAACCACTACATAATAAATCATTTGTG > USA300TCH1516_ALE/2580701‑2580790 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |