BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2580666 =	87 (0.880)	8 (0.090)	4/140	NT	10.4%	intergenic (+301/‑307)	yveA/pnbA	Aspartate‑proton symporter/Para‑nitrobenzyl esterase
*	?	USA300TCH1516_ALE	2580701 =	62 (0.720)	8 (0.090)	4/140	NT	10.4%	intergenic (+336/‑272)	yveA/pnbA	Aspartate‑proton symporter/Para‑nitrobenzyl esterase

Only 100 of 112 total aligned reads displayed.

AGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTGGCTA  >  USA300TCH1516_ALE/2580576‑2580755

cacaaatgatttattatgtagtggttcttatacattagccacagctaatgtgtacttaaaaatatgaatacatgagtaaaactcatgcata                                                                                           >  1:1757398‑M1/91‑91 (MQ=255)

cacaaatgatttattatgtagtggttcttatacattagccacagctaatgtgtacttaaaaatatgaatacatgagtaaaactcatgcata                                                                                           <  1:148038‑M1/1‑1 (MQ=255)

  caaatgatttattatgtagtggttcttatacattagccacagctaatgtgtacttaaaaatatgaatacatgagtaaaactcatgcatAAg                                                                                         <  1:1400234‑M1/3‑1 (MQ=255)

   ttttttCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGa                                                                                        >  1:2752810/1‑91 (MQ=255)

    tttttCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGaa                                                                                       <  1:3452577/91‑1 (MQ=255)

     ttttCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGaaa                                                                                      >  1:1760812/1‑91 (MQ=255)

     ttttCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGaaa                                                                                      >  1:1845141/1‑91 (MQ=255)

     ttttCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGaaa                                                                                      >  1:1420279/1‑91 (MQ=255)

     ttttCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGaaa                                                                                      <  1:2143331/91‑1 (MQ=255)

     atgatttattatgtagtggttcttatacattagccacagctaatgtgtacttaaaaatatgaatacatgagtaaaactcatgcatAAGaaa                                                                                      >  1:2341325‑M1/86‑91 (MQ=255)

      tttCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAAt                                                                                     <  1:706964/91‑1 (MQ=255)

        tCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATAc                                                                                   >  1:2419888/1‑91 (MQ=255)

        atttattatgtagtggttcttatacattagccacagctaatgtgtacttaaaaatatgaatacatgagtaaaactcatgcatAAGAAATAc                                                                                   <  1:1869302‑M1/9‑1 (MQ=255)

         tttattatgtagtggttcttatacattagccacagctaatgtgtacttaaaaatatgaatacatgagtaaaactcatgcatAAGAAATACt                                                                                  >  1:1404544‑M1/82‑91 (MQ=255)

         tttattatgtagtggttcttatacattagccacagctaatgtgtacttaaaaatatgaatacatgagtaaaactcatgcatAAGAAATACt                                                                                  >  1:900109‑M1/82‑91 (MQ=255)

         tttattatgtagtggttcttatacattagccacagctaatgtgtacttaaaaatatgaatacatgagtaaaactcatgcatAAGAAATACt                                                                                  >  1:900349‑M1/82‑91 (MQ=255)

            ttCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACtttt                                                                               <  1:1994066/91‑1 (MQ=255)

            ttCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACtttt                                                                               >  1:2151812/1‑91 (MQ=255)

            ttCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACtttt                                                                               >  1:1697281/1‑91 (MQ=255)

             tCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACttttt                                                                              <  1:241627/91‑1 (MQ=255)

              cTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTc                                                                             >  1:2354949/1‑91 (MQ=255)

                aGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCta                                                                           <  1:1871286/91‑1 (MQ=255)

                 gtagtggttcttatacattagccacagctaatgtgtacttaaaaatatgaatacatgagtaaaactcatgcatAAGAAATACTTTTTCtat                                                                          >  1:3828345‑M1/74‑91 (MQ=255)

                 gtagtggttcttatacattagccacagctaatgtgtacttaaaaatatgaatacatgagtaaaactcatgcatAAGAAATACTTTTTCtat                                                                          >  1:458056‑M1/74‑91 (MQ=255)

                 gTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCtat                                                                          >  1:1901508/1‑91 (MQ=255)

                 gTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCtat                                                                          <  1:1076943/91‑1 (MQ=255)

                    aGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGa                                                                       >  1:2325481/1‑91 (MQ=255)

                      gggCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGaaa                                                                     >  1:445430/1‑91 (MQ=255)

                       ggCCCTAACACAGAGAATTTCGAAAAGAAGTTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAAt                                                                    <  1:3328105/91‑1 (MQ=255)

                       ggCCCCAACACAGAGAATTTCGAAAAGAACTTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAAt                                                                    <  1:3327656/91‑1 (MQ=255)

                       ggCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAAt                                                                    <  1:2796329/91‑1 (MQ=255)

                        gCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAAtt                                                                   <  1:3813482/91‑1 (MQ=255)

                        gCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAAtt                                                                   <  1:3814120/91‑1 (MQ=255)

                        gCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAAtt                                                                   <  1:209546/91‑1 (MQ=255)

                           ttatacattagccacagctaatgtgtacttaaaaatatgaatacatgagtaaaactcatgcatAAGAAATACTTTTTCTATAGAAATTAGt                                                                >  1:1017372‑M1/64‑91 (MQ=255)

                           ccAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGt                                                                >  1:2876710/1‑91 (MQ=255)

                             aaCTCAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTAt                                                              <  1:3740614/91‑1 (MQ=255)

                              acacAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTAtt                                                             <  1:2693606/91‑1 (MQ=255)

                               cacaGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTAttt                                                            <  1:3918921/91‑1 (MQ=255)

                                 attagccacagctaatgtgtacttaaaaataggaatacatgagtaaaactcatgcatAAGAAATACTTTTTCTATAGAAATTAGTATTTCt                                                          >  1:3799383‑M1/58‑91 (MQ=255)

                                  ttagccacagctaatgtgtacttaaaaataggaatacatgagtaaaactcatgcatAAGTAATACTTTTTCTATAGAAATTAGTATTTCtt                                                         >  1:2604433‑M1/57‑91 (MQ=255)

                                  ttagccacagctaatgtgtacttaaaaataggaatacatgagtaaaactcatgcatAAGTAATACTTTTTCTATAGAAATTAGTATTTCtt                                                         >  1:2604518‑M1/57‑91 (MQ=255)

                                   gagaATTTCGACAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTa                                                        >  1:3611733/1‑91 (MQ=255)

                                   gagaATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTa                                                        <  1:1375407/91‑1 (MQ=255)

                                    agccacagctaatgtgtatttaaaaataggaatacatgagtaaaactcatgcatAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTAt                                                       >  1:724170‑M1/55‑91 (MQ=255)

                                    agaATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTAGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTAt                                                       >  1:3501781/1‑91 (MQ=255)

                                     gaATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTaaa                                                      <  1:3085227/91‑3 (MQ=255)

                                       aTTTCGAAAAGAACTTCTACAGGCAATGCAAGTTGGGGTGGGAGGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCa                                                    <  1:4154510/91‑1 (MQ=255)

                                       aTTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCa                                                    <  1:3189517/91‑1 (MQ=255)

                                       aTTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCa                                                    <  1:3190368/91‑1 (MQ=255)

                                       aTTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCa                                                    <  1:2232784/91‑1 (MQ=255)

                                        tttCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCAt                                                   <  1:1029132/91‑1 (MQ=255)

                                        tttCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCAt                                                   <  1:1030190/91‑1 (MQ=255)

                                           cGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAg                                                >  1:1348429/1‑91 (MQ=255)

                                            gAAGAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCAAGAGt                                               <  1:3272877/91‑1 (MQ=255)

                                            gAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGt                                               <  1:497415/91‑1 (MQ=255)

                                            gAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGt                                               <  1:3725218/91‑1 (MQ=255)

                                            gAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGt                                               <  1:497430/91‑1 (MQ=255)

                                            gAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGt                                               <  1:3725194/91‑1 (MQ=255)

                                              aaaGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGttt                                             >  1:3093252/1‑91 (MQ=255)

                                              aaaGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGttt                                             <  1:3053165/91‑1 (MQ=255)

                                               aaGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGtaaa                                            <  1:3320704/91‑4 (MQ=255)

                                                aGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTa                                           <  1:2553502/91‑1 (MQ=255)

                                                  aaaTTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACt                                         <  1:3122970/91‑1 (MQ=255)

                                                        tACAGGCAATGCAAGTTTGGGTGGGACGACGATAAAGAAATGCTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTa                                   <  1:3559602/91‑1 (MQ=255)

                                                          cAGGCAATGCAAGTTGGGGTGGGACGACGATAGAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGATTTTTACTCATGTAtt                                 <  1:3536382/91‑1 (MQ=255)

                                                          cAGGCAATGCAAGTTGGGGTGGGACGACGATAGAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGACTTTTACTCATGTAtt                                 <  1:3536313/91‑1 (MQ=255)

                                                          cAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTAtt                                 >  1:3994094/1‑91 (MQ=255)

                                                          cAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTAtt                                 <  1:4005261/91‑1 (MQ=255)

                                                           atgCAAAGGAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTc                                <  1:2822202/89‑1 (MQ=255)

                                                           aGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTc                                <  1:2772878/91‑1 (MQ=40)

                                                             gCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCat                              <  1:4083687/91‑1 (MQ=255)

                                                             gCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCat                              <  1:4082008/91‑1 (MQ=255)

                                                               aaTGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCatat                            <  1:838161/91‑1 (MQ=255)

                                                                aTGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATAtt                           <  1:2682453/91‑1 (MQ=40)

                                                                   cAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATAttttt                        <  1:3249450/91‑1 (MQ=37)

                                                                     aGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTaa                      >  1:2401915/1‑91 (MQ=34)

                                                                      gTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAg                     <  1:1044356/91‑1 (MQ=34)

                                                                      gTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAg                     <  1:1897218/91‑1 (MQ=34)

                                                                      gTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAg                     >  1:3592929/1‑91 (MQ=34)

                                                                      gTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAg                     <  1:1795022/91‑1 (MQ=34)

                                                                      gTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAg                     >  1:379095/1‑91 (MQ=33)

                                                                       ttGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGt                    <  1:3903152/91‑1 (MQ=33)

                                                                       ttGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGt                    >  1:1708711/1‑91 (MQ=34)

                                                                         ggggTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTac                  >  1:908735/1‑91 (MQ=34)

                                                                           ggTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTacac                <  1:2558083/91‑1 (MQ=34)

                                                                           ggTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTacac                <  1:1297670/91‑1 (MQ=34)

                                                                           ggTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTacac                <  1:1297615/91‑1 (MQ=34)

                                                                           ggTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTacac                >  1:3418789/1‑91 (MQ=34)

                                                                           ggTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTacac                >  1:3417820/1‑91 (MQ=34)

                                                                             tGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACAt              <  1:157524/91‑1 (MQ=34)

                                                                             tGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTGCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACAt              <  1:3288551/91‑1 (MQ=21)

                                                                             tGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTGCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACAt              <  1:3288465/91‑1 (MQ=21)

                                                                               ggACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTa            >  1:776248/1‑91 (MQ=34)

                                                                                  cgacgaTAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGcc         <  1:878099/91‑2 (MQ=21)

                                                                                     cgaTAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGccaca      <  1:624576/91‑5 (MQ=21)

                                                                                      gaTAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTgg     <  1:1611323/91‑1 (MQ=33)

                                                                                       aTAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTGGc    <  1:3305018/91‑1 (MQ=34)

                                                                                        tAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTGGCt   <  1:1186443/91‑1 (MQ=34)

                                                                                         aaaGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTATTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTGGCTa  >  1:1159362/1‑91 (MQ=18)

AGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTTTTCTATAGAAATTAGTATTTCTTATGCATGAGTTTTACTCATGTATTCATATTTTTAAGTACACATTAGCTGTGGCTA  >  USA300TCH1516_ALE/2580576‑2580755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.