| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2591898 = | 89 (0.910) | 6 (0.070) | 5/144 | NT | 7.4% | coding (626/1194 nt) | ttuB | Putative tartrate transporter |
| ? | USA300TCH1516_ALE | 2591947 = | 69 (0.780) | coding (577/1194 nt) | ttuB | Putative tartrate transporter | |||||
GGCTATCGCGTGACCTTTGCTGAACAGGAACCCGATACGTCAGATAAGATTGAAAAAATGCCGTTTAACGCTGTAACTGTTTTTGCGCAATTTTTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2591995‑2591898‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttttcaaTCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATAAAGATAATGACAATT > USA300TCH1516_ALE/2591947‑2592035 GGCTATCGCGTGACCTTTGCTGAACAGGAACCCGATACGTCAGATAAGATTGAAAAAATGCCGTTTAACGCTGTAACTGTTTTTGCGCAAT < 1:1854454/91‑1 GCTATCGCGTGACCTTTGCTGAACAGGAACCCGATACGTCAGATAAGATTGAAAAAATGCCGTTTAACGCTGTAACTGTTTTTGCGCAATT > 1:288852/1‑91 TATCGCGTGACCTTTGCTGAACAGGAACCCGATACGTCAGATAAGATTGAAAAAATGCCGTTTAACGCTGTAACTGTTTTTGCGCAATTTT < 1:2661434/91‑1 TCGCGTGACCTTTGCTGAACAGGAACCCGATACGTCAGATAAGATTGAAAAAATGCCGTTTAACGCTGTAACTGTTTTTGCGCAATTTTTC < 1:1595442/91‑1 TCGCGTGACCTTTGCTGAACAGGAACCCGATACGTCAGATAAGATTGAAAAAATGCCGTTTAACGCTGTAACTGTTTTTGCGCAATTTTTC < 1:3894861/91‑1 TCGCGTGACCTTTGCTGAACAGGAACCCGATACGTCAGATAAGATTGAAAAAATGCCGTTTAACGCTGTAACTGTTTTTGCGCAATTTTTC < 1:2828287/91‑1 TCGCGTGACCTTTGCTGAACAGGAACCCGATACGTCACATAAGATTGAAAACATGCCGTTTAACGGTGTAACTGTTTTTGCGCAACTTTTC > 1:3862512/1‑91 CGCGTGACCTTTGCTGAACAGGAACCCGATACGTCAGATAAGATTGAAAAAATGCCGTTTAACGCTGTAACTGTTTTTGCGCAATTTTTCA > 1:428830/1‑91 GATTGAAAAAATGCCGTTTAACGCTGTAACTGTTTTTGCGCAATTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCAC > 1:152427/1‑91 ATTGAAAAAATGCCGTTTAACGCTGTAACTGTTTTTGCGCAATTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACG > 1:255488/1‑91 ATTGAAAAAATGCCGTTTAACGCTGTAACTGTTTTTGCGCAATTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACG > 1:255749/1‑91 GAAAAAATGCCGTTTAACGCTGTAACTGTTTTTGCGCAATTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGA > 1:142118/1‑91 AAAAATGCCGTTTAACGCTGTAACTGTTTTTGCGCAATTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATA > 1:2842539/1‑91 AAATGCCGTTTAACGCTGTAACTGTTTTTGCGCAATTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGC > 1:1442970/1‑91 TTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACCCGATAGCCAAAGAATGTTGTTGTTAATGCGATAAAGATAATGA > 1:4142288/1‑91 TCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATAAAGATAATGACAA > 1:2528906/1‑91 TCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATAAAGATAATGACAA > 1:4029455/1‑91 TCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATAAAGATAATGACAA > 1:4029672/1‑91 CAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATAAAGATAATGACAAT < 1:392200/91‑1 AATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATAAAGATAATGACAATT < 1:2947516/91‑1 GGCTATCGCGTGACCTTTGCTGAACAGGAACCCGATACGTCAGATAAGATTGAAAAAATGCCGTTTAACGCTGTAACTGTTTTTGCGCAATTTTTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2591995‑2591898‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttttcaaTCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATAAAGATAATGACAATT > USA300TCH1516_ALE/2591947‑2592035 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |