BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2591898 =	89 (0.910)	6 (0.070)	5/144	NT	7.4%	coding (626/1194 nt)	ttuB	Putative tartrate transporter
*	?	USA300TCH1516_ALE	2591947 =	69 (0.780)	6 (0.070)	5/144	NT	7.4%	coding (577/1194 nt)	ttuB	Putative tartrate transporter

Only 100 of 102 total aligned reads displayed.

CAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATAAAGATAATGACAATTGC  >  USA300TCH1516_ALE/2591857‑2592037

cgtgacctttgctgaacaggaacccgatacgtcagataagaTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAAt                                                                                            >  1:255488‑M1/42‑91 (MQ=255)

cgtgacctttgctgaacaggaacccgatacgtcagataagaTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAAt                                                                                            >  1:255749‑M1/42‑91 (MQ=255)

caacaaTCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAAt                                                                                            <  1:3772167/91‑1 (MQ=255)

 gtgacctttgctgaacaggaacccgatacgtcagataagaTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATc                                                                                           >  1:152427‑M1/41‑91 (MQ=255)

 aacaaTCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATc                                                                                           >  1:1235972/1‑91 (MQ=255)

  acaaTCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCt                                                                                          >  1:3791509/1‑91 (MQ=255)

  acaaTCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCt                                                                                          >  1:2662257/1‑91 (MQ=255)

  acaaTCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCt                                                                                          >  1:2662814/1‑91 (MQ=255)

     aTCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTAt                                                                                       >  1:1790289/1‑91 (MQ=255)

      tCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATc                                                                                      >  1:3794465/1‑91 (MQ=255)

         tGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGa                                                                                   >  1:1831143/1‑91 (MQ=255)

         tGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGa                                                                                   >  1:1831186/1‑91 (MQ=255)

         tGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGa                                                                                   >  1:1831172/1‑91 (MQ=255)

            taataCCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGt                                                                                <  1:2153177/91‑1 (MQ=255)

             aataCCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTa                                                                               >  1:3189288/1‑91 (MQ=255)

              ataCCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTAt                                                                              <  1:1221938/91‑1 (MQ=255)

                aCCACTGTTCAGCAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCg                                                                            <  1:3766116/91‑1 (MQ=255)

                aCCACTGTTCACCAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCg                                                                            <  1:3767243/91‑1 (MQ=255)

                 ccgcTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCgg                                                                           <  1:3887566/88‑1 (MQ=255)

                 ccACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCgg                                                                           <  1:3887721/91‑1 (MQ=255)

                  cACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCggg                                                                          <  1:805373/91‑1 (MQ=255)

                  cACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCggg                                                                          <  1:805235/91‑1 (MQ=255)

                  cACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCggg                                                                          <  1:2204706/91‑1 (MQ=255)

                   aCTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGt                                                                         <  1:4025451/91‑1 (MQ=255)

                   aCTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGt                                                                         <  1:2905871/91‑1 (MQ=255)

                        tCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTg                                                                    >  1:2185228/1‑91 (MQ=255)

                         caacaaCTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGt                                                                   >  1:3066245/1‑91 (MQ=255)

                         caacaaCTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGt                                                                   >  1:2579092/1‑91 (MQ=255)

                         caacaaCTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGt                                                                   >  1:2579244/1‑91 (MQ=255)

                           acagcTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTc                                                                 <  1:3756603/91‑1 (MQ=255)

                           acaacTCTTTATTTTTGAAAAATTGCGCGAAAACAGTTACAGCGTTAAGCGGCATTTTTTAAATCTTATCTGTCGTATTGGGTTCCTGTTc                                                                 >  1:1539527/1‑91 (MQ=255)

                           acaacTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTc                                                                 >  1:1261380/1‑91 (MQ=255)

                           acaacTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTc                                                                 >  1:2288208/1‑91 (MQ=255)

                           acaacTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTc                                                                 >  1:3167493/1‑91 (MQ=255)

                           acaacTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTc                                                                 >  1:615223/1‑91 (MQ=255)

                           acaacTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTc                                                                 <  1:4047506/91‑1 (MQ=255)

                              acTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGc                                                              >  1:3065486/1‑91 (MQ=255)

                               ctctTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCa                                                             <  1:827403/91‑1 (MQ=255)

                               ctctTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCa                                                             >  1:1791314/1‑91 (MQ=255)

                                tctTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCaa                                                            <  1:3368590/91‑1 (MQ=255)

                                tctTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCaa                                                            <  1:3944044/91‑1 (MQ=255)

                                tctTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCaa                                                            <  1:3944546/91‑1 (MQ=255)

                                  tttATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAg                                                          >  1:3913955/1‑91 (MQ=255)

                                   ttATTTTTGAAGAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAgg                                                         <  1:3762582/91‑1 (MQ=255)

                                    tATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGt                                                        >  1:1660777/1‑91 (MQ=255)

                                    tATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGt                                                        >  1:1661229/1‑91 (MQ=255)

                                     aTTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTc                                                       <  1:2182669/91‑1 (MQ=255)

                                      tttttGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCa                                                      <  1:3802945/91‑1 (MQ=255)

                                       ttttGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCAc                                                     <  1:398185/91‑1 (MQ=255)

                                       ttttGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCAc                                                     <  1:1982578/91‑1 (MQ=255)

                                       gattgaaaaaatgccgtttaacgctgtaactgtttttgcgcaatttttcaaTCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCAc                                                     >  1:152427‑M2/52‑91 (MQ=255)

                                        attgaaaaaatgccgtttaacgctgtaactgtttttgcgcaatttttcaaTCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCAcg                                                    >  1:255488‑M2/51‑91 (MQ=255)

                                        attgaaaaaatgccgtttaacgctgtaactgtttttgcgcaatttttcaaTCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCAcg                                                    >  1:255749‑M2/51‑91 (MQ=255)

                                          TGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCAcgcg                                                  >  1:428830‑M1/1‑91 (MQ=255)

                                           gaaaaaatgccgtttaacgctgtaactgtttttgcgcaatttttcaaTCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGa                                                 >  1:142118‑M2/48‑91 (MQ=255)

                                           GAAAAGTTGCGCAAAAACAGTTACACCGTTAAACGGCATGTTTTCAATCTTATGTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGa                                                 >  1:3862512‑M1/1‑91 (MQ=255)

                                           GAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGa                                                 <  1:2828287‑M1/91‑1 (MQ=255)

                                           GAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGa                                                 <  1:1595442‑M1/91‑1 (MQ=255)

                                           GAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGa                                                 <  1:3894861‑M1/91‑1 (MQ=255)

                                             aaaaatgccgtttaacgctgtaactgtttttgcgcaatttttcaaTCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATa                                               >  1:2842539‑M2/46‑91 (MQ=255)

                                             AAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATa                                               <  1:2661434‑M1/91‑1 (MQ=255)

                                               aaatgccgtttaacgctgtaactgtttttgcgcaatttttcaaTCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGc                                             >  1:1442970‑M2/44‑91 (MQ=255)

                                               AATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGc                                             >  1:288852‑M1/1‑91 (MQ=255)

                                                ATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGcc                                            <  1:1854454‑M1/91‑1 (MQ=255)

                                                 ttGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCa                                           <  1:742597/91‑1 (MQ=255)

                                                  tGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCaa                                          >  1:134835/1‑91 (MQ=255)

                                                   gcgcAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCaaa                                         <  1:2486070/91‑1 (MQ=255)

                                                    cgcAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTAGCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAg                                        <  1:4140361/91‑1 (MQ=255)

                                                     gcAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGa                                       >  1:2603766/1‑91 (MQ=255)

                                                     gcAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGa                                       >  1:2603718/1‑91 (MQ=255)

                                                      cAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGaa                                      <  1:3991601/91‑1 (MQ=255)

                                                       aaaaaCAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTCCAGCAAAGGTCACGCGATAGCCAAAGAAt                                     >  1:3323607/1‑91 (MQ=255)

                                                           aCAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAAtgttg                                 <  1:2685431/91‑1 (MQ=255)

                                                           aCAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAAtgttg                                 <  1:2291074/91‑1 (MQ=255)

                                                           aCAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAAtgttg                                 <  1:2291642/91‑1 (MQ=255)

                                                              gTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAAtgttgttg                              <  1:62677/91‑1 (MQ=255)

                                                                tACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATgttgttgtt                            >  1:1441857/1‑91 (MQ=255)

                                                                     cGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGc                       <  1:1053871/91‑1 (MQ=255)

                                                                     cGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGc                       <  1:359712/91‑1 (MQ=255)

                                                                     cGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGc                       <  1:109376/91‑1 (MQ=255)

                                                                        tAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGAt                    <  1:424695/91‑1 (MQ=255)

                                                                        tAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGAt                    <  1:2533463/91‑1 (MQ=255)

                                                                         aaaCGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATa                   >  1:3223412/1‑91 (MQ=255)

                                                                         aaaCGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATa                   <  1:3691252/91‑1 (MQ=255)

                                                                          aaCGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATaa                  >  1:3024050/1‑91 (MQ=255)

                                                                          aaCGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATaa                  <  1:1678621/91‑1 (MQ=255)

                                                                          aaCGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATaa                  <  1:3702452/91‑1 (MQ=255)

                                                                           aCGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATaaa                 >  1:3217220/1‑91 (MQ=255)

                                                                           aCGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATaaa                 >  1:2883403/1‑91 (MQ=255)

                                                                            cGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATAAAg                >  1:47095/1‑91 (MQ=255)

                                                                              gCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATAAAGAt              >  1:1209404/1‑91 (MQ=255)

                                                                                 ttttttCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATAAAGATAAt           <  1:2535136/91‑1 (MQ=255)

                                                                                 ttttttCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATAAAGATAAt           <  1:2535135/91‑1 (MQ=255)

                                                                                   ttttcaaTCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACCCGATAGCCAAAGAATGTTGTTGTTAATGCGATAAAGATAATGa         >  1:4142288‑M2/8‑91 (MQ=255)

                                                                                      tcaaTCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATAAAGATAATGACaa      >  1:4029672‑M2/5‑91 (MQ=255)

                                                                                      tcaaTCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATAAAGATAATGACaa      >  1:4029455‑M2/5‑91 (MQ=255)

                                                                                      tcaaTCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATAAAGATAATGACaa      >  1:2528906‑M2/5‑91 (MQ=255)

                                                                                       caaTCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATAAAGATAATGACAAt     <  1:392200‑M2/88‑1 (MQ=255)

                                                                                        aaTCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATAAAGATAATGACAAtt    <  1:2947516‑M2/89‑1 (MQ=255)

                                                                                          tCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATAAAGATAATGACAATTGc  <  1:1993242/91‑1 (MQ=255)

CAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCACGCGATAGCCAAAGAATGTTGTTGTTAATGCGATAAAGATAATGACAATTGC  >  USA300TCH1516_ALE/2591857‑2592037

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.