BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2591898 =	89 (0.910)	6 (0.070)	5/144	NT	7.4%	coding (626/1194 nt)	ttuB	Putative tartrate transporter
*	?	USA300TCH1516_ALE	2591947 =	69 (0.780)	6 (0.070)	5/144	NT	7.4%	coding (577/1194 nt)	ttuB	Putative tartrate transporter

Only 100 of 116 total aligned reads displayed.

CTGTGTATAACGGTACAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCAC  >  USA300TCH1516_ALE/2591809‑2591986

cTGTGTATAACGGTACAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTAttttt                                                                                         <  1:2742983/91‑1 (MQ=255)

cTGTGTATAACGGTACAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTAttttt                                                                                         >  1:1413277/1‑91 (MQ=255)

aattgtcattatctttatcgcattaacaacaacattctttggctatcgcgtgacctttgctgaacaggaacccgatacgtcagataagatt                                                                                         <  1:2947516‑M1/2‑1 (MQ=255)

 tgtgTATAACGGTACAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTg                                                                                        <  1:2736888/91‑1 (MQ=255)

 tgtgTATAACGGTACAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTg                                                                                        >  1:3250677/1‑91 (MQ=255)

 tgtgTATAACGGTACAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTg                                                                                        >  1:1609997/1‑91 (MQ=255)

 tgtgTATAACGGTACAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTg                                                                                        >  1:3705349/1‑91 (MQ=255)

 attgtcattatctttatcgcattaacaacaacattctttggctatcgcgtgacctttgctgaacaggaacccgatacgtcagataagaTTg                                                                                        <  1:392200‑M1/3‑1 (MQ=255)

  ttgtcattatctttatcgcattaacaacaacattctttggctatcgcgtgacctttgctgaacaggaacccgatacgtcagataagaTTGa                                                                                       >  1:2528906‑M1/88‑91 (MQ=255)

  ttgtcattatctttatcgcattaacaacaacattctttggctatcgcgtgacctttgctgaacaggaacccgatacgtcagataagaTTGa                                                                                       >  1:4029455‑M1/88‑91 (MQ=255)

  ttgtcattatctttatcgcattaacaacaacattctttggctatcgcgtgacctttgctgaacaggaacccgatacgtcagataagaTTGa                                                                                       >  1:4029672‑M1/88‑91 (MQ=255)

  gtgtATAACGGTACAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGa                                                                                       >  1:2031337/1‑91 (MQ=255)

   tgtATAACGGTACAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGaa                                                                                      <  1:3697132/91‑1 (MQ=255)

   tgtATAACGGTACAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGaa                                                                                      <  1:3697124/91‑1 (MQ=255)

     tcattatctttatcgcattaacaacaacattctttggctatcgggtgacctttgctgaacaggaacccgatacgtcagataagaTTGaaaa                                                                                    >  1:4142288‑M1/85‑91 (MQ=255)

     tataACGGTACAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGaaaa                                                                                    <  1:2936104/91‑1 (MQ=255)

       taACGGTACAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAAt                                                                                  >  1:1550017/1‑91 (MQ=255)

       taACGGTACAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAAt                                                                                  >  1:102872/1‑91 (MQ=255)

         aCGGTACAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTg                                                                                >  1:4047010/1‑91 (MQ=255)

         aCGGTACAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTg                                                                                >  1:4047734/1‑91 (MQ=255)

          cGGTACAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTgc                                                                               <  1:2588284/91‑1 (MQ=255)

           ggTACAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTAGAAAAATTgcg                                                                              >  1:76778/1‑91 (MQ=255)

            gTACAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTgcgc                                                                             <  1:1228451/91‑1 (MQ=255)

              aCAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCaa                                                                           >  1:3139412/1‑91 (MQ=255)

              aCAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCaa                                                                           >  1:851786/1‑91 (MQ=255)

              aCAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCaa                                                                           >  1:3995000/1‑91 (MQ=255)

                 aaTGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCaaaaa                                                                        >  1:3649429/1‑91 (MQ=255)

                  aTGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAAc                                                                       >  1:3495767/1‑91 (MQ=255)

                  aTGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAAc                                                                       >  1:618889/1‑91 (MQ=255)

                  aTGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAAc                                                                       <  1:2555277/91‑1 (MQ=255)

                    gTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAg                                                                     >  1:2166166/1‑91 (MQ=255)

                     tACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGt                                                                    >  1:1086216/1‑91 (MQ=255)

                         aaCTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACa                                                                <  1:1387904/91‑1 (MQ=255)

                          aCTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAg                                                               >  1:2245009/1‑91 (MQ=255)

                            tGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCg                                                             >  1:691824/1‑91 (MQ=255)

                                  aaaTACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAAc                                                       <  1:2354527/91‑1 (MQ=255)

                                  aaaTACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAAc                                                       <  1:1285714/91‑1 (MQ=255)

                                  aaaTACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAAc                                                       <  1:206297/91‑1 (MQ=255)

                                   aaTACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACg                                                      <  1:1140741/91‑1 (MQ=255)

                                    aTACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAAGTGCGCAAAAACAGTTACAGCGTTAAACgg                                                     >  1:2309428/1‑91 (MQ=255)

                                     tACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGc                                                    <  1:548380/91‑1 (MQ=255)

                                     tACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGc                                                    <  1:1554008/91‑1 (MQ=255)

                                      aCAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCa                                                   <  1:3474857/91‑1 (MQ=255)

                                       cAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCAt                                                  >  1:4027075/1‑91 (MQ=255)

                                       cAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCAt                                                  >  1:3418432/1‑91 (MQ=255)

                                       cAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCAt                                                  >  1:2594311/1‑91 (MQ=255)

                                        aaTCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCAtt                                                 >  1:2889654/1‑91 (MQ=255)

                                         gctatcgcgtgacctttgctgaacaggaacccgatacgtcagataagaTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCAttt                                                >  1:1442970‑M1/49‑91 (MQ=255)

                                         aTCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAATGGCAttt                                                >  1:2069050/1‑91 (MQ=255)

                                         aTCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCAttt                                                >  1:3801734/1‑91 (MQ=255)

                                         aTCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCAttt                                                >  1:2343159/1‑91 (MQ=255)

                                         aTCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCAttt                                                >  1:2974054/1‑91 (MQ=255)

                                          tCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCAtttt                                               <  1:942959/91‑1 (MQ=255)

                                           tatcgcgtgacctttgctgaacaggaacccgatacgtcagataagaTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCAttttt                                              >  1:2842539‑M1/47‑91 (MQ=255)

                                           cGATGCAACAATCATGATAATACCACCGTTCAACAACTCTTTATTTTTGAAAAATCGCGCAAAAACAGTTACAGCGTTAAACGGCAttttt                                              >  1:1274602/1‑91 (MQ=255)

                                            gATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCAtttttt                                             >  1:3449141/1‑91 (MQ=255)

                                             tcgcgtgacctttgctgaacaggaacccgatacgtcagataagaTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTc                                            >  1:142118‑M1/45‑91 (MQ=255)

                                               gCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCaa                                          <  1:2823838/91‑1 (MQ=255)

                                                cgtgacctttgctgaacaggaacccgatacgtcagataagaTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAAt                                         >  1:255749‑M1/42‑91 (MQ=255)

                                                caacaaTCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAAt                                         <  1:3772167/91‑1 (MQ=255)

                                                 aacaaTCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATc                                        >  1:1235972/1‑91 (MQ=255)

                                                  acaaTCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCt                                       >  1:2662814/1‑91 (MQ=255)

                                                  acaaTCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCt                                       >  1:3791509/1‑91 (MQ=255)

                                                     aTCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTAt                                    >  1:1790289/1‑91 (MQ=255)

                                                      tCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATc                                   >  1:3794465/1‑91 (MQ=255)

                                                         tGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGa                                >  1:1831186/1‑91 (MQ=255)

                                                         tGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGa                                >  1:1831143/1‑91 (MQ=255)

                                                         tGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGa                                >  1:1831172/1‑91 (MQ=255)

                                                            taataCCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGt                             <  1:2153177/91‑1 (MQ=255)

                                                              ataCCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTAt                           <  1:1221938/91‑1 (MQ=255)

                                                                aCCACTGTTCACCAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCg                         <  1:3767243/91‑1 (MQ=255)

                                                                 ccgcTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCgg                        <  1:3887566/88‑1 (MQ=255)

                                                                 ccACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCgg                        <  1:3887721/91‑1 (MQ=255)

                                                                  cACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCggg                       <  1:805373/91‑1 (MQ=255)

                                                                  cACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCggg                       <  1:805235/91‑1 (MQ=255)

                                                                   aCTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGt                      <  1:4025451/91‑1 (MQ=255)

                                                                        tCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTg                 >  1:2185228/1‑91 (MQ=255)

                                                                         caacaaCTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGt                >  1:2579244/1‑91 (MQ=255)

                                                                         caacaaCTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGt                >  1:2579092/1‑91 (MQ=255)

                                                                         caacaaCTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGt                >  1:3066245/1‑91 (MQ=255)

                                                                           acagcTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTc              <  1:3756603/91‑1 (MQ=255)

                                                                           acaacTCTTTATTTTTGAAAAATTGCGCGAAAACAGTTACAGCGTTAAGCGGCATTTTTTAAATCTTATCTGTCGTATTGGGTTCCTGTTc              >  1:1539527/1‑91 (MQ=255)

                                                                           acaacTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTc              >  1:2288208/1‑91 (MQ=255)

                                                                           acaacTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTc              >  1:1261380/1‑91 (MQ=255)

                                                                           acaacTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTc              >  1:615223/1‑91 (MQ=255)

                                                                           acaacTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTc              >  1:3167493/1‑91 (MQ=255)

                                                                              acTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGc           >  1:3065486/1‑91 (MQ=255)

                                                                               ctctTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCa          <  1:827403/91‑1 (MQ=255)

                                                                               ctctTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCa          >  1:1791314/1‑91 (MQ=255)

                                                                                tctTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCaa         <  1:3944044/91‑1 (MQ=255)

                                                                                tctTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCaa         <  1:3944546/91‑1 (MQ=255)

                                                                                tctTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCaa         <  1:3368590/91‑1 (MQ=255)

                                                                                  tttATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAg       >  1:3913955/1‑91 (MQ=255)

                                                                                   ttATTTTTGAAGAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAgg      <  1:3762582/91‑1 (MQ=255)

                                                                                    tATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGt     >  1:1661229/1‑91 (MQ=255)

                                                                                    tATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGt     >  1:1660777/1‑91 (MQ=255)

                                                                                     aTTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTc    <  1:2182669/91‑1 (MQ=255)

                                                                                      tttttGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCa   <  1:3802945/91‑1 (MQ=255)

                                                                                       ttttGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCAc  <  1:1982578/91‑1 (MQ=255)

                                                                                       ttttGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCAc  <  1:398185/91‑1 (MQ=255)

CTGTGTATAACGGTACAAATGTACTAACTGCACCAAATACAATCGATGCAACAATCATGATAATACCACTGTTCAACAACTCTTTATTTTTGAAAAATTGCGCAAAAACAGTTACAGCGTTAAACGGCATTTTTTCAATCTTATCTGACGTATCGGGTTCCTGTTCAGCAAAGGTCAC  >  USA300TCH1516_ALE/2591809‑2591986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.