| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2595468 = | 97 (0.990) | 9 (0.100) | 6/150 | NT | 9.3% | coding (423/936 nt) | nikB_3 | Nickel transport system permease protein NikB |
| ? | USA300TCH1516_ALE | 2595506 = | 85 (0.920) | coding (385/936 nt) | nikB_3 | Nickel transport system permease protein NikB | |||||
GTGTTATGGTGATGATTACATCAATTATTTTAGGTGTAGTTAGTGCATTAAAAAGAGGAAAGTTCACTGATCGTGCGATACGTTCAGTG‑GCTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2595562‑2595468‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttcCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCAATGTATTCATAA > USA300TCH1516_ALE/2595506‑2595595 GTGTTATGGTGATGATTACATCAATTATTTTAGGTGTAGTTAGTGCATTAAAAAGAGGAAAGTTCACTGATCGTGCGATACGTTCAGTG‑GC > 1:710513/1‑91GTGTTATGGTGATGATTACATCAATTATTTTAGGTGTAGTTAGTGCATTAAAAAGAGGAAAGTTCACTGATCGTGCGATACGTTCAGTG‑GC < 1:2108135/91‑1GTGTTATGGTGATGATTACATCAATTATTTTAGGTGTAGTTAGTGCATTAAAAAGAGGAAAGTTCACTGATCGTGCGATACGTTCAGTG‑GC > 1:2880182/1‑91 GTTATGGTGATGATTACATCAATTATTTTAGGTGTAGTTAGTGCATTAAAAAGAGGAAAGTTCACTGATCGTGCGATACGTTCAGTG‑GCTT < 1:1246549/91‑1 GTTATGGTGATGATTACATCAATTATTTTAGGTGTAGTTAGTGCATTAAAAAGAGGAAAGTTCACTGATCGTGCGATACGTTCAGTG‑GCTT < 1:620877/91‑1 GTTATGGTGATGATTACATCAATTATTTTAGGTGTAGTTAGTGCATTAAAAAGAGGAAAGTTCACTGATCGTGCGATACGTTCAGTG‑GCTT < 1:3528065/91‑1 GTTATGGTGATGATTACATCAATTATTTTAGGTGTAGTTAGTGCATTAAAAAGAGGAAAGTTCACTGATCGTGCGATACGTTCAGTG‑GCTT < 1:3137512/91‑1 GTTATGGTGATGATTACATCAATTATTTTAGGTGTAGTTAGTGCATTAAAAAGAGGAAAGTTCACTGATCGTGCGATACGTTCAGTG‑GCTT < 1:3137271/91‑1 GTTATGGTGATGATTACATCAATTATTTTAGGTGTAGTTAGTGCATTAAAAAGAGGAAAGTTCACTGATCGTGCGATACGTTCAGTG‑GCTT < 1:3136548/91‑1 TTATGGTGATGATTACATCAATTATTTTAGGTGTAGTTAGTGCATTACAAAGAGGAAAGTTCACTGATCGTGCGATACGTTCAGTG‑GCTTT > 1:4146097/1‑91 TTATGGTGATGATTACATCAATTATTTTAGGTGTAGTTAGTGCATTAAAAAGAGGAAAGTTCACTGATCGTGCGATACGTTCAGTG‑GCTTT < 1:1120590/91‑1 AGGAAAGTTCACTGATCGTGCGATACGTTCAGTG‑GCTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCA > 1:2533027/1‑91 AAGTTCACTGATCGTGCGATACGTTCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAA > 1:787493/1‑91 AAGTTCACTGATCGTGCGATACGTTCAGTG‑GCTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAAC > 1:3356426/1‑91 TTCACTGATCGTGCGATACGTTCAGTG‑GCTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACT > 1:4008340/1‑91 TCACTGATCGTGCGATACGTTCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACT > 1:3699953/1‑91 TCACTGATCGTGCGATACGTTCAGTG‑GCTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTT > 1:191382/1‑91 TCACTGATCGTGCGATACGTTCAGTG‑GCTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTT > 1:3808108/1‑91 GATCGTGCGATACGTTCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAA > 1:2308873/1‑91 GTGCGATACGTTCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTAT > 1:3138254/1‑91 CTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCAATGTATTC < 1:2724233/91‑1 CCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCAATGTATTCATAA > 1:2480053/1‑91 CCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCAATGTATTCATAA < 1:3885480/91‑1 CCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCAATGTATTCATAA > 1:1910108/1‑91 GTGTTATGGTGATGATTACATCAATTATTTTAGGTGTAGTTAGTGCATTAAAAAGAGGAAAGTTCACTGATCGTGCGATACGTTCAGTG‑GCTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2595562‑2595468‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttcCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCAATGTATTCATAA > USA300TCH1516_ALE/2595506‑2595595 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |