BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2595468 =	97 (0.990)	9 (0.100)	6/150	NT	9.3%	coding (423/936 nt)	nikB_3	Nickel transport system permease protein NikB
*	?	USA300TCH1516_ALE	2595506 =	85 (0.920)	9 (0.100)	6/150	NT	9.3%	coding (385/936 nt)	nikB_3	Nickel transport system permease protein NikB

Only 100 of 127 total aligned reads displayed.

CGTAAATAATAAGTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCAATGTATTCATAAA  >  USA300TCH1516_ALE/2595416‑2595596

cGTAAATAATAAGTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTcc                                                                                            >  1:2906134/1‑91 (MQ=255)

cGTAAATAATAAGTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTcc                                                                                            <  1:3888497/91‑1 (MQ=255)

cGTAAATAATAAGTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTcc                                                                                            <  1:1226765/91‑1 (MQ=255)

 tggtgatgattacatcaattattttaggtgtagttagtgcattaaaaagagGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCct                                                                                           >  1:2533027‑M1/52‑91 (MQ=255)

 gTAAATAATAAGTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCct                                                                                           <  1:425480/91‑1 (MQ=255)

    aataatAAGTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCtt                                                                                        >  1:2832051/1‑91 (MQ=255)

    aataatAAGTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCtt                                                                                        <  1:1229093/91‑1 (MQ=255)

    aataatAAGTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCtt                                                                                        >  1:2656257/1‑91 (MQ=255)

    aataatAAGTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCtt                                                                                        >  1:2656137/1‑91 (MQ=255)

    aataatAAGTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCtt                                                                                        <  1:2005439/91‑1 (MQ=255)

     ataataAGTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCttt                                                                                       <  1:1502191/91‑1 (MQ=255)

      taataaGTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCtttt                                                                                      >  1:3586003/1‑91 (MQ=255)

      taataaGTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCtttt                                                                                      <  1:1382066/91‑1 (MQ=255)

        ataaGTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTa                                                                                    >  1:3514281/1‑91 (MQ=255)

        ataaGTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTa                                                                                    >  1:4089986/1‑91 (MQ=255)

        ataaGTATTGAAGCTATCCAATATGATGGTAATGCAGATAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTa                                                                                    >  1:3511822/1‑91 (MQ=255)

         taaGTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTaa                                                                                   <  1:1679812/91‑1 (MQ=255)

         taaGTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTaa                                                                                   <  1:377162/91‑1 (MQ=255)

          aaGTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAAt                                                                                  >  1:2350148/1‑91 (MQ=255)

           aGTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATg                                                                                 <  1:3613021/91‑1 (MQ=255)

           aGTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATg                                                                                 <  1:3613242/91‑1 (MQ=255)

            gTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGc                                                                                <  1:662908/91‑1 (MQ=255)

            gTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGc                                                                                >  1:4077485/1‑91 (MQ=255)

            gTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGc                                                                                >  1:2342998/1‑91 (MQ=255)

            gTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGc                                                                                <  1:663546/91‑1 (MQ=255)

             tATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCa                                                                               <  1:2184487/91‑1 (MQ=255)

              aTTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCac                                                                              >  1:2307212/1‑91 (MQ=255)

               ttGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCact                                                                             >  1:219186/1‑91 (MQ=255)

                tGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCacta                                                                            <  1:1974128/91‑1 (MQ=255)

                 gAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCactaa                                                                           >  1:2679812/1‑91 (MQ=255)

                 gAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCactaa                                                                           >  1:2679813/1‑91 (MQ=255)

                   aGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCactaact                                                                         <  1:3821390/91‑1 (MQ=255)

                   aGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCactaact                                                                         >  1:830498/1‑91 (MQ=255)

                   aGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCactaact                                                                         >  1:3321906/1‑91 (MQ=255)

                   aGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCactaact                                                                         >  1:1833890/1‑91 (MQ=255)

                        tCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACAcc                                                                    <  1:3144817/91‑1 (MQ=255)

                         ccAATGTGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCt                                                                   <  1:1892508/91‑1 (MQ=255)

                          cAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACAccgg                                                                  <  1:750231/91‑3 (MQ=255)

                          cAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTa                                                                  >  1:1017366/1‑91 (MQ=255)

                            atatGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTaaa                                                                <  1:1326157/91‑1 (MQ=255)

                            atatGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTaaa                                                                >  1:2564972/1‑91 (MQ=255)

                             tatGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTaaaa                                                               >  1:1328969/1‑91 (MQ=255)

                             tatGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTATTTAATGCACTAACTACACCTaaaa                                                               >  1:3850226/1‑91 (MQ=255)

                              atgatgGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAaat                                                              >  1:3118901/1‑91 (MQ=255)

                                gatgGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAaataa                                                            >  1:2700003/1‑91 (MQ=255)

                                 atgGTAATGCAGTTAGAAAGAAAGTCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAaataat                                                           <  1:2194441/91‑1 (MQ=255)

                                 atgGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAaataat                                                           >  1:3215887/1‑91 (MQ=255)

                                 atgGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAaataat                                                           >  1:1075432/1‑91 (MQ=255)

                                 atgGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAaataat                                                           >  1:2916927/1‑91 (MQ=255)

                                  tgGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAAtt                                                          <  1:1239889/91‑1 (MQ=255)

                                     tAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGAt                                                       <  1:1758649/91‑1 (MQ=255)

                                             ttAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAatcat                                               >  1:3092089/1‑91 (MQ=255)

                                              tAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAatcatc                                              >  1:2576094/1‑91 (MQ=255)

                                                 aaagaaagCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCAcc                                           >  1:2117131/1‑91 (MQ=255)

                                                  aagaaagCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCa                                          <  1:1791064/91‑1 (MQ=255)

                                                  aagaaagCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCa                                          <  1:4130438/91‑1 (MQ=255)

                                                  aagaaagCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCa                                          >  1:1244489/1‑91 (MQ=255)

                                                     aagttcactgatcgtgcgatacgttcagtgaactttcCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATaa                                       >  1:787493‑M2/38‑91 (MQ=255)

                                                     AAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATaa                                       <  1:1120590‑M1/91‑1 (MQ=255)

                                                     AAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTGTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATaa                                       >  1:4146097‑M1/1‑91 (MQ=255)

                                                      aagttcactgatcgtgcgatacgttcagtggctttcCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAac                                      >  1:3356426‑M2/37‑91 (MQ=255)

                                                      AAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAac                                      <  1:3137271‑M1/91‑1 (MQ=255)

                                                      AAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAac                                      <  1:620877‑M1/91‑1 (MQ=255)

                                                      AAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAac                                      <  1:3136548‑M1/91‑1 (MQ=255)

                                                        GCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAacac                                    >  1:710513‑M1/1‑91 (MQ=255)

                                                         ttcactgatcgtgcgatacgttcagtggctttcCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACt                                   >  1:4008340‑M2/34‑91 (MQ=255)

                                                         ccACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACt                                   >  1:587817/1‑91 (MQ=255)

                                                         ccACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACt                                   >  1:883227/1‑91 (MQ=255)

                                                          tcactgatcgtgcgatacgttcagtggctttcCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACtt                                  >  1:191382‑M2/33‑91 (MQ=255)

                                                          tcactgatcgtgcgatacgttcagtggctttcCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACtt                                  >  1:3808108‑M2/33‑91 (MQ=255)

                                                          cACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACtt                                  <  1:2881955/91‑1 (MQ=255)

                                                          cACTGAACGTAGCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACtt                                  <  1:3753374/91‑1 (MQ=255)

                                                           aCTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTg                                 >  1:620751/1‑91 (MQ=255)

                                                              gatcgtgcgatacgttcagtgaactttcCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGaaa                              >  1:2308873‑M2/29‑91 (MQ=255)

                                                                  gtgcgatacgttcagtgaactttcCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAattat                          >  1:3138254‑M2/25‑91 (MQ=255)

                                                                  gTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAattat                          >  1:2523952/1‑91 (MQ=255)

                                                                    aTCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTg                        <  1:3139701/91‑1 (MQ=255)

                                                                     tCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGGAATTATTGt                       <  1:2090157/91‑1 (MQ=255)

                                                                     tCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGt                       <  1:1309231/91‑1 (MQ=255)

                                                                     tCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGt                       <  1:127472/91‑1 (MQ=255)

                                                                     tCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGt                       >  1:2750610/1‑91 (MQ=255)

                                                                     tCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGt                       <  1:2193536/91‑1 (MQ=255)

                                                                          cGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAAtt                  >  1:3839983/1‑91 (MQ=255)

                                                                          cGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAACTATTGTTAAtt                  >  1:3763130/1‑91 (MQ=255)

                                                                           gATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAAttt                 <  1:1017468/91‑1 (MQ=255)

                                                                             tCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCa               <  1:3137655/91‑1 (MQ=255)

                                                                             tCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCa               >  1:851437/1‑91 (MQ=255)

                                                                              cAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCaa              <  1:341356/91‑1 (MQ=255)

                                                                              cAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCaa              >  1:3680072/1‑91 (MQ=255)

                                                                              cAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCaa              <  1:341404/91‑1 (MQ=255)

                                                                                 tGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCAATGt           >  1:2238328/1‑91 (MQ=255)

                                                                                 tGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCAATGt           >  1:3749184/1‑91 (MQ=255)

                                                                                    aCTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCAATGTAtt        <  1:2481758/91‑1 (MQ=255)

                                                                                    aCTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCAATGTAtt        >  1:4088020/1‑91 (MQ=255)

                                                                                    aCTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAACCCTCACCATAACACTTCAAATTATTGTTAATTTCAATGTCtt        >  1:4087850/1‑91 (MQ=255)

                                                                                     ctttcCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCAATGTATTc       <  1:2724233‑M2/86‑1 (MQ=255)

                                                                                         cCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCAATGTATTCATaa   >  1:2480053‑M2/2‑91 (MQ=255)

                                                                                         cCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCAATGTATTCATaa   <  1:3885480‑M2/90‑1 (MQ=255)

                                                                                          ctctTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCAATGTATTCATaaa  >  1:2597895/1‑91 (MQ=255)

                                                                                          ctctTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCAATGTATTCATaaa  <  1:2114324/91‑1 (MQ=255)

CGTAAATAATAAGTATTGAAGCTATCCAATATGATGGTAATGCAGTTAGAAAGAAAGCCACTGAACGTATCGCACGATCAGTGAACTTTCCTCTTTTTAATGCACTAACTACACCTAAAATAATTGATGTAATCATCACCATAACACTTGAAATTATTGTTAATTTCAATGTATTCATAAA  >  USA300TCH1516_ALE/2595416‑2595596

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.