| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2605654 | 99 (1.010) | 8 (0.090) | 10/146 | NT | 7.6% | intergenic (‑448/+4) | ahpD/USA300HOU_RS13415 | Alkyl hydroperoxide reductase AhpD/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2605665 | 103 (1.150) | coding (413/420 nt) | USA300HOU_RS13415 | hypothetical protein | |||||
GAAGTATTGGTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2605558‑2605654‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagaagGCCACTAG‑GGTCTTCTTTATTTTTGATTTAATCTTCCAATAATCTATGTCATTGCTATCGAAGGTGTTTCGCAATTAATATAAATCACTT < USA300TCH1516_ALE/2605665‑2605576 GAAGTATTGGTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATA > 1:477043/1‑91GAAGTATTGGTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATA > 1:3986770/1‑91GAAGTATTGGTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATA > 1:2982150/1‑91GAAGTATTGGTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATA > 1:2830156/1‑91GAAGTATTGGTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATA > 1:2808692/1‑91 AAGTATTGGTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAA < 1:1205096/91‑1 AAGTATTGGTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAA < 1:3382871/91‑1 AGTATTGGTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAA > 1:1429365/1‑91 GTATTGGTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAG < 1:1208937/91‑1 TTGGTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAG < 1:1108394/91‑1 TGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGGCCACTAG‑GG < 1:754765/91‑1 AGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGGCCACTAG‑GGTCT < 1:3758382/91‑1 TGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGGCCACTAG‑GGTCTTC < 1:498712/91‑1 GATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGGCCACTAG‑GGTCTTCT < 1:456172/91‑1 TTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGGCCACTAG‑GGTCTTCTTTA < 1:3706067/91‑1 AGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCCTCTTTATTTTTGATTTAATCTTCCAATAATCTA > 1:3403719/1‑91 CAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTATTTTTGATTTAATCTTCCAATAATCTATGTCATTGCTATCGAAGGTGTTTCGCAATTA > 1:1367157/1‑91 AAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTATTTTTGATTTAATCTTCCAATAATCTATGTCATTGCTATCGAAGGTGTTTCGCAATTAA > 1:26612/1‑91 AAATAAAGAAGACC‑CTAGTGGCCTTCTTTATTTTTGATTTAATCTTCCAATAATCTATGTCATTGCTATCGAAGGTGTTTCGCAATTAATA > 1:863962/1‑91 ATAAAGAAGACC‑CTAGTGGCCTTCTTTATTTTTGATTTAATCTTCCAATAATCTATGTCATTGCTATCGAAGGTGTTTCGCAATTAATATA > 1:732669/1‑91 AAAGAAGGCCACTAG‑GGTCTTCTTTATTTTTGATTTAATCTTCCAATAATCTATGTCATTGCTATCGAAGGTGTTTCGCAATTAATATAAA > 1:2055821/1‑91 AAAGAAGGCCACTAG‑GGTCTTCTTTATTTTTGATTTAATCTTCCAATAATCTATGTCATTGCTATCGAAGGTGTTTCGCAATTAATATAAA < 1:1810046/91‑1 GAAGGCCACTAG‑GGTCTTCTTTATTTTTGATTTAATCTTCCAATAATCTATGTCATTGCTATCGAAGGTGTTTCGCAATTAATATAAATCA > 1:3568838/1‑91 GAAGGCCACTAG‑GGTCTTCTTTATTTTTGATTTAATCTTCCAATAATCTATGTCATTGCTATCGAAGGTGTTTCGCAATTAATATAAATCA > 1:2517772/1‑91 AGGCCACTAG‑GGTCTTCTTTATTTTTGATTTAATCTTCCAATAATCTATGTCATTGCTATCGAAGGTGTTTCGCAATTAATATAAATCACT > 1:3448312/1‑91 AGGCCACTAG‑GGTCTTCTTTATTTTTGATTTAATCTTCCAATAATCTATGTCATTGCTATCGAAGGTGTTTCGCAATTAATATAAATCACT < 1:3009688/91‑1 AGGCCACTAG‑GGTCTTCTTTATTTTTGATTTAATCTTCCAATAATCTATGTCATTGCTATCGAAGGTGTTTCGCAATTAATATAAATCACT > 1:2004168/1‑91 AGGCCACTAG‑GGTCTTCTTTATTTTTGATTTAATCTTCCAATAATCTATGTCATTGCTATCGAAGGTGTTTCGCAATTAATATAAATCACT > 1:2005567/1‑91 GGCCACTAG‑GGTCTTCTTTATTTTTGATTTAATCTTCCAATAATCTATGTCATTGCTATCGAAGGTGTTTCGCAATTAATATAAATCACTT > 1:620362/1‑91 GGCCACTAG‑GGTCTTCTTTATTTTTGATTTAATCTTCCAATAATCTATGTCATTGCTATCGAAGGTGTTTCGCAATTAATATAAATCACTT > 1:2420970/1‑91 GGCCACTAG‑GGTCTTCTTTATTTTTGATTTAATCTTCCAATAATCTATGTCATTGCTATCGAAGGTGTTTCGCAATTAATATAAATCACTT > 1:2420896/1‑91 GAAGTATTGGTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2605558‑2605654‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagaagGCCACTAG‑GGTCTTCTTTATTTTTGATTTAATCTTCCAATAATCTATGTCATTGCTATCGAAGGTGTTTCGCAATTAATATAAATCACTT < USA300TCH1516_ALE/2605665‑2605576 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |