BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2605654	99 (1.010)	8 (0.090)	10/146	NT	7.6%	intergenic (‑448/+4)	ahpD/USA300HOU_RS13415	Alkyl hydroperoxide reductase AhpD/hypothetical protein
*	?	USA300TCH1516_ALE	= 2605665	103 (1.150)	8 (0.090)	10/146	NT	7.6%	coding (413/420 nt)	USA300HOU_RS13415	hypothetical protein

Only 100 of 146 total aligned reads displayed.

GAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTA  >  USA300TCH1516_ALE/2605575‑2605755

gaAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGc                                                                                            <  1:3205889/91‑1 (MQ=255)

gaAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGc                                                                                            >  1:1829345/1‑91 (MQ=255)

gaAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGc                                                                                            >  1:1934193/1‑91 (MQ=255)

gaAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGc                                                                                            <  1:4085057/91‑1 (MQ=255)

gaAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGc                                                                                            >  1:4019988/1‑91 (MQ=255)

 aaGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCc                                                                                           >  1:620362‑M2/1‑90 (MQ=255)

 aaGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCc                                                                                           >  1:2420970‑M2/1‑90 (MQ=255)

  aGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCct                                                                                          <  1:3009688‑M2/91‑3 (MQ=255)

  aGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCct                                                                                          >  1:2005567‑M2/1‑89 (MQ=255)

  aGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCct                                                                                          >  1:2004168‑M2/1‑89 (MQ=255)

    tGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCcttc                                                                                        >  1:3568838‑M2/1‑87 (MQ=255)

    tGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCcttc                                                                                        >  1:2517772‑M2/1‑87 (MQ=255)

       tttATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCcttcttt                                                                                     <  1:1810046‑M2/91‑8 (MQ=255)

       tttATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCcttcttt                                                                                     >  1:2055821‑M2/1‑84 (MQ=255)

         tataTTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGGCCACTAG‑GGTcttctttat                                                                                   >  1:732669‑M2/1‑82 (MQ=255)

         tataTTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCttttt                                                                                   <  1:4646/91‑1 (MQ=255)

         tataTTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCttttt                                                                                   >  1:793616/1‑91 (MQ=255)

           tatTAATTGCGAAACACCTTCGATATCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTa                                                                                 <  1:3870628/91‑1 (MQ=255)

           tatTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGGCCACTAG‑GGTcttctttattt                                                                                 >  1:863962‑M2/1‑80 (MQ=255)

           tatTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTa                                                                                 >  1:3276713/1‑91 (MQ=255)

           tatTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTa                                                                                 >  1:2704820/1‑91 (MQ=255)

            atTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTAt                                                                                >  1:3606218/1‑91 (MQ=255)

             ttAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGGCCACTAG‑GGTcttctttattttt                                                                               >  1:26612‑M2/1‑78 (MQ=255)

              tAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCt                                                                              >  1:2760181/1‑91 (MQ=255)

               aaTTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTa                                                                             >  1:2942321/1‑91 (MQ=255)

               aaTTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTa                                                                             >  1:3669685/1‑91 (MQ=255)

               aaTTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTa                                                                             <  1:2394425/91‑1 (MQ=255)

                 ttGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAAt                                                                           >  1:3363864/1‑91 (MQ=255)

                   gCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAAttc                                                                         >  1:2053144/1‑91 (MQ=255)

                     gAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAAttctt                                                                       >  1:2631481/1‑91 (MQ=255)

                     gAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAAttctt                                                                       <  1:1195603/91‑1 (MQ=255)

                       aaCACCTGCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATtcttct                                                                     <  1:2073195/91‑1 (MQ=255)

                        acacCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTcttctt                                                                    <  1:4098129/91‑1 (MQ=255)

                         cacCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCttt                                                                   >  1:1055627/1‑91 (MQ=255)

                         cacCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCttt                                                                   >  1:1937394/1‑91 (MQ=255)

                          acCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTg                                                                  >  1:1648989/1‑91 (MQ=255)

                            cTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGAt                                                                >  1:4131501/1‑91 (MQ=255)

                              tCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAACGAAGACC‑CTAGCGGCCTTCTTTTTTATCTAATTCTTCTCTGAttt                                                              >  1:1645992/1‑91 (MQ=255)

                               cGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGAtttt                                                             >  1:562895/1‑91 (MQ=255)

                                gATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGAttttt                                                            <  1:1859940/91‑1 (MQ=255)

                                 aTAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGAtttttt                                                           <  1:24348/91‑1 (MQ=255)

                                  tAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTc                                                          <  1:786191/91‑1 (MQ=255)

                                    gCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTg                                                        <  1:3334845/91‑1 (MQ=255)

                                     cAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTgg                                                       <  1:232651/91‑1 (MQ=255)

                                     cAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTgg                                                       <  1:2091338/91‑1 (MQ=255)

                                      aaTGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGt                                                      >  1:2396819/1‑91 (MQ=255)

                                       aTGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTg                                                     <  1:2859834/91‑1 (MQ=255)

                                          aCATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGAtt                                                  <  1:2238781/91‑1 (MQ=255)

                                           cATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGAttt                                                 <  1:3922045/91‑1 (MQ=255)

                                            aTAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGAtttt                                                >  1:1433369/1‑91 (MQ=255)

                                             tAGATTATTGGAAGATTAAATCAAAAATAAAGAGGGCCACTAG‑GGTcttctttatttttgatttaatcttccaataatctatgtcattgct                                               >  1:3403719‑M2/1‑46 (MQ=255)

                                               gATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATtttctt                                             >  1:1680048/1‑91 (MQ=255)

                                                    ttGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAtg                                        <  1:1657268/91‑1 (MQ=255)

                                                    ttGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAtg                                        <  1:1638358/91‑1 (MQ=255)

                                                     tGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAtgt                                       >  1:1202760/1‑91 (MQ=255)

                                                      ggAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAtgtg                                      >  1:2180842/1‑91 (MQ=255)

                                                       gAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATGTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGc                                     <  1:1249785/91‑1 (MQ=255)

                                                       gAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGc                                     >  1:1743801/1‑91 (MQ=255)

                                                       gAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGc                                     >  1:3182159/1‑91 (MQ=255)

                                                       gAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGc                                     >  1:1476476/1‑91 (MQ=255)

                                                        aaGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCt                                    >  1:1852310/1‑91 (MQ=255)

                                                        aaGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCt                                    >  1:3521927/1‑91 (MQ=255)

                                                         aGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGCTTTTCTTTCATGTGCTg                                   >  1:1894070/1‑91 (MQ=255)

                                                             tAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGttt                               <  1:1659686/91‑1 (MQ=255)

                                                              aaaTCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGtttt                              >  1:4152596/1‑91 (MQ=255)

                                                                aTCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTtaa                            >  1:3700921/1‑91 (MQ=255)

                                                                aTCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTtaa                            >  1:736768/1‑91 (MQ=255)

                                                                 tCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTtaat                           >  1:1994954/1‑91 (MQ=255)

                                                                   aaaaaTAAAGAGGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTtaataa                         <  1:3758088/91‑1 (MQ=255)

                                                                   aaaaaTAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTtaataa                         >  1:2014205/1‑91 (MQ=255)

                                                                   aaaaaTAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTtaataa                         <  1:2166328/91‑1 (MQ=255)

                                                                     aaaTAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAAtt                       <  1:347788/91‑1 (MQ=255)

                                                                     aaaTAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAAtt                       <  1:3455370/91‑1 (MQ=255)

                                                                        tAAAGAAGACC‑CTAGTGGCcttctttatttttgatttaatcttccaataatctatgtcattgctatcgaaggtgtttcgcaattaatataa                    <  1:3706067‑M2/91‑73 (MQ=255)

                                                                        tAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTAt                    <  1:1015767/91‑1 (MQ=255)

                                                                            gaagaCC‑CTAGTGGCcttctttatttttgatttaatcttccaataatctatgtcattgctatcgaaggtgtttcgcaattaatataaatca                <  1:498712‑M2/91‑77 (MQ=255)

                                                                             aagaCC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACt               >  1:1702837/1‑91 (MQ=255)

                                                                              agaCC‑CTAGTGGCcttctttatttttgatttaatcttccaataatctatgtcattgctatcgaaggtgtttcgcaattaatataaatcact              <  1:3758382‑M2/91‑79 (MQ=255)

                                                                              agaCC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTc              <  1:3193859/91‑1 (MQ=255)

                                                                              agaCC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTc              >  1:2891685/1‑91 (MQ=255)

                                                                              agaCC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTc              >  1:2891745/1‑91 (MQ=255)

                                                                              agaCC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTc              <  1:3639559/91‑1 (MQ=255)

                                                                              agaCC‑CTAGTGGCCTTCTATTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTc              >  1:390726/1‑91 (MQ=255)

                                                                               gaCC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTcc             <  1:768652/91‑1 (MQ=255)

                                                                               gaCC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGACTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTcc             >  1:265991/1‑91 (MQ=255)

                                                                                aCC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCt            <  1:2588558/91‑1 (MQ=255)

                                                                                aCC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCt            >  1:1338617/1‑91 (MQ=255)

                                                                                  c‑cTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTc          <  1:3912789/91‑1 (MQ=255)

                                                                                  c‑cTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTc          <  1:2569033/91‑1 (MQ=255)

                                                                                     tAGTGGCCTTCTTTTTTATCTAATTCTTCTTTTATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCAc        <  1:3532937/91‑1 (MQ=255)

                                                                                     tAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCAc        <  1:1395797/91‑1 (MQ=255)

                                                                                     tAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCAc        <  1:1396031/91‑1 (MQ=255)

                                                                                     tAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCAc        <  1:771750/91‑1 (MQ=255)

                                                                                     tAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCAc        >  1:326621/1‑91 (MQ=255)

                                                                                       gTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACtt      <  1:1915297/91‑1 (MQ=255)

                                                                                       gTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACtt      >  1:932394/1‑91 (MQ=255)

                                                                                         ggCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACtttt    <  1:471221/91‑1 (MQ=255)

                                                                                         ggCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACtttt    <  1:3223075/91‑1 (MQ=255)

                                                                                         ggCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACtttt    <  1:2309035/91‑1 (MQ=255)

                                                                                           ccTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTa  >  1:1114959/1‑91 (MQ=255)

GAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCCTTCACTTTTTA  >  USA300TCH1516_ALE/2605575‑2605755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.