BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2605654	99 (1.010)	8 (0.090)	10/146	NT	7.6%	intergenic (‑448/+4)	ahpD/USA300HOU_RS13415	Alkyl hydroperoxide reductase AhpD/hypothetical protein
*	?	USA300TCH1516_ALE	= 2605665	103 (1.150)	8 (0.090)	10/146	NT	7.6%	coding (413/420 nt)	USA300HOU_RS13415	hypothetical protein

Only 100 of 157 total aligned reads displayed.

TTGGTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCC  >  USA300TCH1516_ALE/2605564‑2605744

ttGGTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAG                                                                                             <  1:1108394‑M1/91‑1 (MQ=255)

  ggTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGAc                                                                                           <  1:3574841/91‑1 (MQ=255)

   gTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGAcc                                                                                          >  1:3252474/1‑91 (MQ=255)

      atgatgaAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTa                                                                                      >  1:1610806/1‑91 (MQ=255)

        gatgaAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGt                                                                                    >  1:1937838/1‑91 (MQ=255)

          tgaAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTgg                                                                                  <  1:133088/91‑1 (MQ=255)

           gaAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGc                                                                                 >  1:1829345/1‑91 (MQ=255)

           gaAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGc                                                                                 <  1:3205889/91‑1 (MQ=255)

           gaAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGc                                                                                 <  1:4085057/91‑1 (MQ=255)

           gaAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGc                                                                                 >  1:1934193/1‑91 (MQ=255)

            aaGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCc                                                                                >  1:2420970‑M2/1‑90 (MQ=255)

             aGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGgccactagggtct                                                                                <  1:3758382‑M1/91‑14 (MQ=255)

               tGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGgccactagggtcttc                                                                              <  1:498712‑M1/91‑16 (MQ=255)

                gATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGgccactagggtcttct                                                                             <  1:456172‑M1/91‑17 (MQ=255)

                  tttATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCcttcttt                                                                          >  1:2055821‑M2/1‑84 (MQ=255)

                  tttATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCcttcttt                                                                          <  1:1810046‑M2/91‑8 (MQ=255)

                    tataTTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGGCCACTAG‑GGTcttctttat                                                                        >  1:732669‑M2/1‑82 (MQ=255)

                    tataTTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCttttt                                                                        <  1:4646/91‑1 (MQ=255)

                    tataTTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCttttt                                                                        >  1:3892241/1‑91 (MQ=255)

                    tataTTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCttttt                                                                        >  1:793616/1‑91 (MQ=255)

                     atatTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTATTGGCCTTCtttttt                                                                       >  1:1164734/1‑91 (MQ=255)

                     atatTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCtttttt                                                                       >  1:221714/1‑91 (MQ=255)

                      tatTAATTGCGAAACACCTTCGATATCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTa                                                                      <  1:3870628/91‑1 (MQ=255)

                      tatTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGGCCACTAG‑GGTcttctttattt                                                                      >  1:863962‑M2/1‑80 (MQ=255)

                      tatTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTa                                                                      >  1:2704820/1‑91 (MQ=255)

                      tatTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTa                                                                      >  1:3276713/1‑91 (MQ=255)

                        ttAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGGCCACTAG‑GGTcttctttattttt                                                                    >  1:26612‑M2/1‑78 (MQ=255)

                         tAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGGCCACTAG‑GGTcttctttatttttg                                                                   >  1:1367157‑M2/1‑77 (MQ=255)

                         tAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCt                                                                   >  1:2760181/1‑91 (MQ=255)

                          aaTTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTa                                                                  <  1:1593345/91‑1 (MQ=255)

                          aaTTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTa                                                                  >  1:3669765/1‑91 (MQ=255)

                          aaTTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTa                                                                  <  1:2394425/91‑1 (MQ=255)

                           aTTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTaa                                                                 <  1:816896/91‑1 (MQ=255)

                            ttGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAAt                                                                >  1:3363864/1‑91 (MQ=255)

                             tGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAAtt                                                               >  1:2326595/1‑91 (MQ=255)

                                gAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAAttctt                                                            <  1:1195603/91‑1 (MQ=255)

                                gAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAAttctt                                                            >  1:2631481/1‑91 (MQ=255)

                                  aaCACCTGCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATtcttct                                                          <  1:2073195/91‑1 (MQ=255)

                                    cacCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCttt                                                        >  1:1980983/1‑91 (MQ=255)

                                    cacCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCttt                                                        >  1:1055627/1‑91 (MQ=255)

                                    cacCTTCGATAGCAATGACAGAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCttt                                                        >  1:1904381/1‑91 (MQ=255)

                                     acCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTg                                                       >  1:622064/1‑91 (MQ=255)

                                     acCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTg                                                       >  1:1648989/1‑91 (MQ=255)

                                     acCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTg                                                       <  1:1678300/91‑1 (MQ=255)

                                      ccTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGa                                                      <  1:2508265/91‑1 (MQ=255)

                                      ccTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGa                                                      <  1:2018185/91‑1 (MQ=255)

                                       cTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGAt                                                     <  1:4053122/91‑1 (MQ=255)

                                          cGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGAtttt                                                  >  1:562895/1‑91 (MQ=255)

                                           gATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGAttttt                                                 <  1:1859940/91‑1 (MQ=255)

                                             tAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTc                                               <  1:785666/91‑1 (MQ=255)

                                               gCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTg                                             <  1:3334845/91‑1 (MQ=255)

                                                cAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTgg                                            >  1:3609895/1‑91 (MQ=255)

                                                  aTGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTg                                          <  1:2859834/91‑1 (MQ=255)

                                                   tGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGa                                         <  1:293428/91‑1 (MQ=255)

                                                     aCATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGAtt                                       >  1:1856840/1‑91 (MQ=255)

                                                     aCATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGAtt                                       <  1:2238781/91‑1 (MQ=255)

                                                      cATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGAttt                                      <  1:3920888/91‑1 (MQ=255)

                                                      cATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGAttt                                      <  1:3922045/91‑1 (MQ=255)

                                                        tAGATTATTGGAAGATTAAATCAAAAATAAAGAGGGCCACTAG‑GGTcttctttatttttgatttaatcttccaataatctatgtcattgct                                    >  1:3403719‑M2/1‑46 (MQ=255)

                                                          gATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATtttctt                                  >  1:1680048/1‑91 (MQ=255)

                                                               ttGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAtg                             <  1:1657249/91‑1 (MQ=255)

                                                               ttGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAtg                             <  1:1638358/91‑1 (MQ=255)

                                                                tGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCAtgt                            >  1:1202760/1‑91 (MQ=255)

                                                                  gAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATGTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGc                          <  1:1249785/91‑1 (MQ=255)

                                                                  gAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGc                          >  1:1476476/1‑91 (MQ=255)

                                                                  gAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGc                          >  1:1741311/1‑91 (MQ=255)

                                                                  gAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGc                          >  1:3182159/1‑91 (MQ=255)

                                                                   aaGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCt                         >  1:3521927/1‑91 (MQ=255)

                                                                       ttAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGtt                     >  1:303274/1‑91 (MQ=255)

                                                                        tAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGttt                    <  1:1659686/91‑1 (MQ=255)

                                                                         aaaTCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGtttt                   >  1:4152596/1‑91 (MQ=255)

                                                                           aTCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTtaa                 >  1:736768/1‑91 (MQ=255)

                                                                           aTCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTtaa                 >  1:3700921/1‑91 (MQ=255)

                                                                              aaaaaTAAAGAGGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTtaataa              <  1:3758088/91‑1 (MQ=255)

                                                                              aaaaaTAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTtaataa              <  1:2166328/91‑1 (MQ=255)

                                                                              aaaaaTAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTtaataa              >  1:2014205/1‑91 (MQ=255)

                                                                                aaaTAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAAtt            <  1:347788/91‑1 (MQ=255)

                                                                                aaaTAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAAtt            <  1:3455370/91‑1 (MQ=255)

                                                                                aaaTAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAAtt            <  1:4128905/91‑1 (MQ=255)

                                                                                   tAAAGAAGACC‑CTAGTGGCcttctttatttttgatttaatcttccaataatctatgtcattgctatcgaaggtgtttcgcaattaatataa         <  1:3706067‑M2/91‑73 (MQ=255)

                                                                                   tAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTAt         >  1:214124/1‑91 (MQ=255)

                                                                                   tAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTAt         <  1:2004458/91‑1 (MQ=255)

                                                                                   tAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTAt         <  1:1015767/91‑1 (MQ=255)

                                                                                    aaaGAAGgccactagggtcttctttatttttgatttaatcttccaataatctatgtcattgctatcgaaggtgtttcgcaattaatataaa         <  1:1810046‑M1/91‑85 (MQ=255)

                                                                                    aaaGAAGgccactagggtcttctttatttttgatttaatcttccaataatctatgtcattgctatcgaaggtgtttcgcaattaatataaa         >  1:2055821‑M1/1‑7 (MQ=255)

                                                                                       gaaggccactagggtcttctttatttttgatttaatcttccaataatctatgtcattgctatcgaaggtgtttcgcaattaatataaatca      >  1:3568838‑M1/1‑4 (MQ=255)

                                                                                       gaaggccactagggtcttctttatttttgatttaatcttccaataatctatgtcattgctatcgaaggtgtttcgcaattaatataaatca      >  1:2517772‑M1/1‑4 (MQ=255)

                                                                                        aagaCC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACt    >  1:1702837/1‑91 (MQ=255)

                                                                                         aggccactagggtcttctttatttttgatttaatcttccaataatctatgtcattgctatcgaaggtgtttcgcaattaatataaatcact    >  1:3448312‑M1/1‑2 (MQ=255)

                                                                                         aggccactagggtcttctttatttttgatttaatcttccaataatctatgtcattgctatcgaaggtgtttcgcaattaatataaatcact    >  1:2005567‑M1/1‑2 (MQ=255)

                                                                                         aggccactagggtcttctttatttttgatttaatcttccaataatctatgtcattgctatcgaaggtgtttcgcaattaatataaatcact    >  1:2004168‑M1/1‑2 (MQ=255)

                                                                                         aggccactagggtcttctttatttttgatttaatcttccaataatctatgtcattgctatcgaaggtgtttcgcaattaatataaatcact    <  1:3009688‑M1/91‑90 (MQ=255)

                                                                                         agaCC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTc   >  1:2891361/1‑91 (MQ=255)

                                                                                         agaCC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTc   >  1:2891745/1‑91 (MQ=255)

                                                                                         agaCC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTc   <  1:3639559/91‑1 (MQ=255)

                                                                                          ggccactagggtcttctttatttttgatttaatcttccaataatctatgtcattgctatcgaaggtgtttcgcaattaatataaatcactt   >  1:2420896‑M1/1‑1 (MQ=255)

                                                                                          ggccactagggtcttctttatttttgatttaatcttccaataatctatgtcattgctatcgaaggtgtttcgcaattaatataaatcactt   >  1:620362‑M1/1‑1 (MQ=255)

                                                                                          ggccactagggtcttctttatttttgatttaatcttccaataatctatgtcattgctatcgaaggtgtttcgcaattaatataaatcactt   >  1:2420970‑M1/1‑1 (MQ=255)

                                                                                          gaCC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTcc  <  1:768652/91‑1 (MQ=255)

                                                                                          gaCC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGACTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTcc  >  1:265991/1‑91 (MQ=255)

TTGGTGATGATGAAGTGATTTATATTAATTGCGAAACACCTTCGATAGCAATGACATAGATTATTGGAAGATTAAATCAAAAATAAAGAAGACC‑CTAGTGGCCTTCTTTTTTATCTAATTCTTCTTTGATTTTTTCTGGTGATTTTCTTTCATGTGCTGGTTTTAATAATTTATCTACTCC  >  USA300TCH1516_ALE/2605564‑2605744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.